Thank you for releasing the source code! If anyone doesn't mind, I'd
like to work on packaging MALT as well.
On Wed, Oct 12, 2016, at 03:47 AM, Andreas Tille wrote:
> Hi Daniel,
>
> On Tue, Oct 11, 2016 at 07:47:48PM +0200, Daniel Huson wrote:
> > Dear Andreas,
> >
> > sorry, I got side-tracked, but now the repository is open
>
> Thanks for the good news. Could you please do us some favour and tag
> the current version. When looking at
>
> $ cat tex/manual/versioninfo.tex
> \def\VERSION{{0.3.6}}
>
> it seems the current MALT is version 0.3.6 - it would be great if this
> would be reflected in tags at Github since this enables us detecting new
> versions easily.
>
> For those who want to tackle the packaging: I created some preliminary
> packaging stuff in Git[1]. Anybody should feel free to continue from
> here (possibly also in a MoM project).
>
> Kind regards
>
> Andreas.
>
> [1] https://anonscm.debian.org/git/debian-med/malt.git
>
> > > On Sep 16, 2016, at 21:38, Andreas Tille <andr...@an3as.eu> wrote:
> > >
> > > Dear Daniel,
> > >
> > > thanks for the clarification and good luck for the publication.
> > >
> > > Kind regards
> > >
> > > Andreas.
> > >
> > > On Fri, Sep 16, 2016 at 05:35:13PM +0200, Daniel Huson wrote:
> > >> Dear Andreas,
> > >>
> > >> I will open the github repository for MALT within the next few days.
> > >> There are a couple of things that I need to clean up first.
> > >>
> > >> (I was going to wait until our paper that is under review and has been
> > >> accepted for publication, iif it is not good enough for publication then
> > >> it is not good enough for open source…)
> > >>
> > >> Best wishes
> > >> daniel
> > >>
> > >>
> > >>
> > >>> On Sep 16, 2016, at 16:13, Andreas Tille <andr...@an3as.eu> wrote:
> > >>>
> > >>> Dear Prof. Dr. Daniel Huson,
> > >>>
> > >>> as far as I can see there was no response to the mail from Jihyeok about
> > >>> the availability of the source code for MALT. It would be really great
> > >>> if
> > >>> you could possibly forward the question to the people in charge to
> > >>> enable
> > >>> us packaging MALT and MEGAN for Debian since this makes the installation
> > >>> for users quite simple.
> > >>>
> > >>> Kind regards
> > >>>
> > >>> Andreas.
> > >>>
> > >>> On Wed, Aug 03, 2016 at 07:06:40PM +0900, Jihyeok Seo wrote:
> > >>>> Dear Prof. Dr. Daniel Huson,
> > >>>>
> > >>>> I’m writing to you on behalf of the Debian Med team which is a
> > >>>> subgroup inside Debian with the objective to package free software in
> > >>>> the field of biology and medicine. You can see the packages we worked
> > >>>> on in the field of bioinformatics on our so-called tasks list[1].
> > >>>>
> > >>>> While packaging MEGAN Community Edition[2], we hit a roadblock because
> > >>>> we were unable to find the source code for MEGAN alignment tool[3].
> > >>>> Please provide source code for MALT on a public place, so we may
> > >>>> continue packaging MEGAN.
> > >>>>
> > >>>> Kind regards and thank you for choosing a free license,
> > >>>> Jihyeok
> > >>>>
> > >>>> [1]: https://blends.debian.org/med/tasks/bio
> > >>>> [2]: https://github.com/danielhuson/megan-ce/
> > >>>> [3]:
> > >>>> http://ab.inf.uni-tuebingen.de/data/software/malt/download/welcome.html
> > >>>>
> > >>>
> > >>> --
> > >>> http://fam-tille.de
> > >>
> > >> —
> > >> Daniel Huson, Professor of Algorithms in Bioinformatics,
> > >> University of Tuebingen, Center for Bioinformatics (ZBIT), Department of
> > >> Computer Science
> > >> Sand 14, 72076 Tuebingen, Germany, Tel: +49 7071 2970450 Fax: +49 7071
> > >> 295148
> > >> daniel.hu...@uni-tuebingen.de <mailto:daniel.hu...@uni-tuebingen.de>
> > >> <mailto:daniel.hu...@uni-tuebingen.de
> > >> <mailto:daniel.hu...@uni-tuebingen.de>>,
> > >> www-ab.informatik.uni-tuebingen.de
> > >> <http://www-ab.informatik.uni-tuebingen.de/>
> > >> <http://www-ab.informatik.uni-tuebingen.de/
> > >> <http://www-ab.informatik.uni-tuebingen.de/>>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >>
> > >
> > > --
> > > http://fam-tille.de <http://fam-tille.de/>
> > —
> > Daniel Huson, Professor of Algorithms in Bioinformatics,
> > University of Tuebingen, Center for Bioinformatics (ZBIT), Department of
> > Computer Science
> > Sand 14, 72076 Tuebingen, Germany, Tel: +49 7071 2970450 Fax: +49 7071
> > 295148
> > daniel.hu...@uni-tuebingen.de <mailto:daniel.hu...@uni-tuebingen.de>,
> > www-ab.informatik.uni-tuebingen.de
> > <http://www-ab.informatik.uni-tuebingen.de/>
> >
> >
> >
> >
> >
> >
> >
>
> --
> http://fam-tille.de
