Hi, @ian You get right that we can use JDK 7 or 8 to compile as long as the source is 6 compatible.
@stain Now how can I make a java 6 version of taverna-language? Because I have done with all other work to run a workflow . Thanks On Fri, Sep 9, 2016 at 3:36 PM, Ian Dunlop <[email protected]> wrote: > Hello, > > Isn't that just to build android from source? Anyway, it's all really > unclear. I found this > http://stackoverflow.com/questions/20480090/does- > android-support-jdk-6-or-7 > but it still didn't help me. You can use jdk 7 or 8 to compile as long as > the source is 6 compatible. There is a difference here between language > features and api features. The android API probably has some of the jdk 7 > API but it seems to be at the whim of google. > So....as Stian said earlier we could make a java 6 version of > taverna-language by ignoring the ro-bundle module. > > Cheers, > > Ian > > On 9 September 2016 at 08:00, Sagar <[email protected]> wrote: > > > Hi, > > > > Here is the JDK requirement for different Android Version > > https://source.android.com/source/requirements.html > > > > Currently taverna language api support JAVA 8 and newer but we need > minimum > > JAVA 6 and newer support to use taverna language api in taverna mobile > for > > API 16 (JellyBean). > > > > That's why we can't use taverna language api in taverna mobile. > > > > So, Can you provide me what are the input and output attribute in > .t2flow > > file to get their MIME ? > > > > > > Thanks > > > > On Thu, Sep 8, 2016 at 11:54 PM, Gale Naylor < > [email protected]> > > wrote: > > > > > Here is the distribution of Android API levels in use as of Aug 1: > > > https://developer.android.com/about/dashboards/index.html > > > > > > According to this, only 15% of all Android devices are running API 23. > > > > > > > > > On Thu, Sep 8, 2016 at 6:29 AM Ian Dunlop <[email protected]> > wrote: > > > > > > > Hello, > > > > > > > > That page is typically clear as mud! I think it is implying that jdk > 7 > > is > > > > fine for all API levels but for jdk 8 you need API 23 and (if special > > > > language features required) a different compiler. So as long as we > > don't > > > > use jdk 8 features we will be ok (maybe). I guess that means > > > > taverna-language can be used (until we go all lambda crazy). > > > > > > > > Cheers, > > > > > > > > Ian > > > > > > > > On 8 September 2016 at 14:24, Stian Soiland-Reyes <[email protected]> > > > > wrote: > > > > > > > > > I don't think we use any Java 8 features in taverna-language (e.g. > > > > > Stream or lambdas) - but taverna-robundle use java.nio.Path from > Java > > > > > 7. I think it should be possible to make a subset of > > Taverna-language > > > > > you need compile for JAva 6 (e.g. taverna-scufl2-api, > > > > > taverna-scufl2-t2flow and taverna-scufl2-ucfpackage) - perhaps as a > > > > > Maven profile? > > > > > > > > > > https://developer.android.com/guide/platform/j8-jack.html says you > > can > > > > > use Java 7/8 features from API level 23-24. > > > > > > > > > > How do we decide which Android API level we want to support..? > > > > > > > > > > On 8 September 2016 at 10:56, Sagar <[email protected]> > > wrote: > > > > > > Hi, > > > > > > > > > > > > I was reading the readme and I found Taverna-language-API will > only > > > > work > > > > > > with JAVA 8 and newer. > > > > > > We can't use in taverna-mobile because Android API 16 works with > > JAVA > > > > 6. > > > > > > > > > > > > So, Now provide me with the schema of the .t2flow file. > > > > > > > > > > > > Thanks > > > > > > > > > > > > On Thu, Sep 8, 2016 at 2:13 PM, Sagar <[email protected] > > > > > > wrote: > > > > > > > > > > > >> Hi, > > > > > >> > > > > > >> How can I use the taverna-language API to know what will the > > inputs > > > > and > > > > > >> what will the outputs of workflow? > > > > > >> > > > > > >> I don't get any proper guide or code. > > > > > >> > > > > > >> Thanks > > > > > >> > > > > > >> On Fri, Sep 2, 2016 at 6:37 PM, Stian Soiland-Reyes < > > > [email protected] > > > > > > > > > > >> wrote: > > > > > >> > > > > > >>> Yes, you should use taverna-language to load the .t2flow and > > > inspect > > > > > it. > > > > > >>> > > > > > >>> You should not really need to make any Java beans for it as the > > > > > >>> workflow wouldn't be constructed on the phone (although you > could > > > do > > > > > >>> that with the Taverna Language API), but loaded from $somewhere > > as > > > > > >>> previously saved from the Taverna Workbench or downloaded from > > > > > >>> myExperiment - however you can use the API to inspect the > > workflow, > > > > > >>> e.g. list the input port names of the main workflow. > > > > > >>> > > > > > >>> > > > > > >>> See: > > > > > >>> > > > > > >>> https://taverna.incubator.apache.org/download/language/ > > > > > >>> > > > > > >>> Javadoc: > > > > > >>> https://taverna.incubator.apache.org/javadoc/taverna-languag > > > > > >>> e/org/apache/taverna/scufl2/api/package-summary.html > > > > > >>> > > > > > >>> Example: > > > > > >>> https://github.com/apache/incubator-taverna-language/blob/ > > > > > >>> master/taverna-scufl2-examples/src/main/java/org/apache/ > > > > > >>> taverna/examples/ProcessorNames.java > > > > > >>> > > > > > >>> On 29 August 2016 at 14:39, Ian Dunlop <[email protected]> > > > wrote: > > > > > >>> > Hello, > > > > > >>> > > > > > > >>> > There is an xsd for t2flow available in the taverna-language > > > module > > > > > >>> > https://github.com/apache/incubator-taverna-language/blob/ > > > > > >>> master/taverna-scufl2-t2flow/src/main/resources/org/apache/ > > > > > >>> taverna/scufl2/translator/t2flow/xsd/t2flow.xsd > > > > > >>> > You should be able to re-use taverna-language to parse t2flow > > > > rather > > > > > >>> than > > > > > >>> > build your own parser. Perhaps using > > > > > >>> > https://github.com/apache/incubator-taverna-language/tree/ > > > > > >>> master/taverna-scufl2-t2flow. > > > > > >>> > No readme though. Maybe some other devs can advise how to use > > it. > > > > > >>> > > > > > > >>> > Cheers, > > > > > >>> > > > > > > >>> > Ian > > > > > >>> > > > > > > >>> > On 28 August 2016 at 18:23, Sagar <[email protected] > > > > > > wrote: > > > > > >>> > > > > > > >>> >> Hi, > > > > > >>> >> > > > > > >>> >> Is there any predefined tree structure for t2flow xml file ? > > > > > >>> >> > > > > > >>> >> if yes, then provide me so that I am able to create java > beans > > > for > > > > > it. > > > > > >>> >> otherwise, I will create it according to any t2flow xml > file. > > > > > >>> >> > > > > > >>> >> Please revert ASAP. > > > > > >>> >> > > > > > >>> >> Thanks > > > > > >>> >> > > > > > >>> >> On Fri, Aug 26, 2016 at 3:54 PM, Finn Bacall < > > > > > >>> [email protected] > > > > > >>> >> > > > > > > >>> >> wrote: > > > > > >>> >> > > > > > >>> >> > This wouldn't be that hard to implement, you can get the > > > unique > > > > ID > > > > > >>> for > > > > > >>> >> the > > > > > >>> >> > workflow from the parser gem, see: > > > > > >>> >> > > > > > > >>> >> > https://github.com/myExperiment/workflow_parser- > > t2flow/blob/ > > > > > >>> >> > master/lib/t2flow/model.rb#L136 > > > > > >>> >> > > > > > > >>> >> > Then you'd just need to extract it in the parsing method: > > > > > >>> >> > > > > > > >>> >> > https://github.com/myGrid/taverna-player-portal/blob/ > > master/ > > > > > >>> >> > app/models/workflow.rb#L40 > > > > > >>> >> > > > > > > >>> >> > and store it in a new field in the database. > > > > > >>> >> > > > > > > >>> >> > Cheers, > > > > > >>> >> > > > > > > >>> >> > Finn > > > > > >>> >> > > > > > > >>> >> > > > > > > >>> >> > On 26/08/2016 09:32, Ian Dunlop wrote: > > > > > >>> >> > > > > > > >>> >> >> Hello, > > > > > >>> >> >> > > > > > >>> >> >> I think you are pretty much spot on with your diagnosis. > I > > > > agree > > > > > it > > > > > >>> is a > > > > > >>> >> >> bit of a pain that the workflow ids are different. > However, > > > > each > > > > > >>> >> workflow > > > > > >>> >> >> does have a unique uuid internally (with t2flow anyway) > so > > > that > > > > > >>> could be > > > > > >>> >> >> used to check if a workflow on myexperiment and the > portal > > > are > > > > > the > > > > > >>> same. > > > > > >>> >> >> Look for the element <dataflow > id="0f5e83c1-bbb5-42e7-9ba3- > > > > > >>> >> 438f645d3d17" > > > > > >>> >> >> role="top"> in a t2flow file. This probably means that > the > > > > portal > > > > > >>> would > > > > > >>> >> >> need an extension to search by workflow uuid. For now I > > would > > > > > just > > > > > >>> treat > > > > > >>> >> >> each run as having a unique workflow and we can always > > > improve > > > > it > > > > > >>> later. > > > > > >>> >> >> > > > > > >>> >> >> Cheers, > > > > > >>> >> >> > > > > > >>> >> >> Ian > > > > > >>> >> >> > > > > > >>> >> >> On 26 August 2016 at 08:02, Sagar < > > [email protected] > > > > > > > > > >>> wrote: > > > > > >>> >> >> > > > > > >>> >> >> Hello, > > > > > >>> >> >>> > > > > > >>> >> >>> Thank you for providing code. Now, I am working on it. > > > > > >>> >> >>> > > > > > >>> >> >>> Currently, I have understood that I need following steps > > to > > > > run > > > > > a > > > > > >>> >> >>> workflow > > > > > >>> >> >>> on taverna player portal > > > > > >>> >> >>> > > > > > >>> >> >>> 1) Download workflow content. > > > > > >>> >> >>> 2) Upload it to taverna player portal. > > > > > >>> >> >>> 3) Run it on taverna player portal. > > > > > >>> >> >>> 4) Show output of the complete workflow's run. > > > > > >>> >> >>> > > > > > >>> >> >>> I have also understood that there is no link between > > > > > myExperiment > > > > > >>> >> >>> workflow > > > > > >>> >> >>> and Taverna Player workflow that's why I can't retain > > > > > >>> myExperiment's > > > > > >>> >> >>> workflow running history on Taverna player portal and > > also I > > > > > can't > > > > > >>> >> search > > > > > >>> >> >>> the same workflow in taverna player portal. For each new > > > run, > > > > I > > > > > >>> have to > > > > > >>> >> >>> upload it again. > > > > > >>> >> >>> > > > > > >>> >> >>> > > > > > >>> >> >>> If I have understood correct then Please revert back . > > > > > >>> >> >>> > > > > > >>> >> >>> If not then, Please correct me. > > > > > >>> >> >>> > > > > > >>> >> >>> Thanks > > > > > >>> >> >>> > > > > > >>> >> >>> > > > > > >>> >> >>> On Wed, Aug 24, 2016 at 8:48 PM, Ian Dunlop < > > > > > [email protected]> > > > > > >>> >> >>> wrote: > > > > > >>> >> >>> > > > > > >>> >> >>> Hello, > > > > > >>> >> >>>> > > > > > >>> >> >>>> This is where the upload code is in the current mobile > > code > > > > > >>> >> >>>> https://github.com/apache/ > incubator-taverna-mobile/blob/ > > > > > >>> >> >>>> 4daa91d3f42b5a4474303fd39c7a7e > > > c1483cebff/app/src/main/java/ > > > > > >>> >> >>>> org/apache/taverna/mobile/fragments/workflowdetails/ > > > > > >>> >> >>>> WorkflowdetailFragment.java#L655 > > > > > >>> >> >>>> > > > > > >>> >> >>>> Cheers, > > > > > >>> >> >>>> > > > > > >>> >> >>>> Ian > > > > > >>> >> >>>> > > > > > >>> >> >>>> On 24 August 2016 at 14:40, Ian Dunlop < > > > [email protected] > > > > > > > > > > >>> wrote: > > > > > >>> >> >>>> > > > > > >>> >> >>>> Hello, > > > > > >>> >> >>>>> > > > > > >>> >> >>>>> That upload code should already be available in the > > mobile > > > > > app. > > > > > >>> >> Larry, > > > > > >>> >> >>>>> myself and Finn spent a few hours figuring all that > > stuff > > > > out > > > > > >>> last > > > > > >>> >> time > > > > > >>> >> >>>>> round. > > > > > >>> >> >>>>> I have added an API call in the taverna-player-portal > to > > > get > > > > > the > > > > > >>> runs > > > > > >>> >> >>>>> > > > > > >>> >> >>>> for > > > > > >>> >> >>> > > > > > >>> >> >>>> a user eg /users/1/runs. Pull request waiting in github > > > (hint > > > > > hint > > > > > >>> >> >>>>> > > > > > >>> >> >>>> Finn). I > > > > > >>> >> >>>> > > > > > >>> >> >>>>> even added some tests. > > > > > >>> >> >>>>> > > > > > >>> >> >>>>> Cheers, > > > > > >>> >> >>>>> > > > > > >>> >> >>>>> Ian > > > > > >>> >> >>>>> > > > > > >>> >> >>>>> On 24 August 2016 at 10:57, Finn Bacall < > > > > > >>> >> [email protected]> > > > > > >>> >> >>>>> wrote: > > > > > >>> >> >>>>> > > > > > >>> >> >>>>> On 23/08/2016 11:38, Sagar wrote: > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>>> Hi, > > > > > >>> >> >>>>>>> > > > > > >>> >> >>>>>>> I think there is some problem as mention below > > > > > >>> >> >>>>>>> > > > > > >>> >> >>>>>>> 1) How can I upload a workflow using API ? > > > > > >>> >> >>>>>>> > > > > > >>> >> >>>>>>> here's a gist of some Java code someone wrote to > > upload > > > a > > > > > >>> workflow > > > > > >>> >> to > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>> the > > > > > >>> >> >>>> > > > > > >>> >> >>>>> portal: > > > > > >>> >> >>>>>> https://gist.github.com/larrytech7/ > > 957cc61a3bdd82e3e030 > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>>> Basically the format is: > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>>> { "workflow" : { "document" : > > > "data:application/octet- > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>> stream;base64,<<<Insert > > > > > >>> >> >>>> > > > > > >>> >> >>>>> base64 encoded workflow here>>>" } } > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>>> Finn > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>>> > > > > > >>> >> >>>>> > > > > > >>> >> >>> > > > > > >>> >> >>> -- > > > > > >>> >> >>> > > > > > >>> >> >>> *With warm regards * > > > > > >>> >> >>> *Sincerely yours* > > > > > >>> >> >>> Sagar > > > > > >>> >> >>> > > > > > >>> >> >>> > > > > > >>> >> >>> *Student ,(7th Semester )B.Tech IT and mathematical > > > > innovation* > > > > > >>> >> >>> *Cluster Innovation Centre* > > > > > >>> >> >>> *University of Delhi * > > > > > >>> >> >>> > > > > > >>> >> >>> > > > > > >>> >> > > > > > > >>> >> > > > > > >>> >> > > > > > >>> >> -- > > > > > >>> >> > > > > > >>> >> *With warm regards * > > > > > >>> >> *Sincerely yours* > > > > > >>> >> Sagar > > > > > >>> >> > > > > > >>> >> > > > > > >>> >> *Student ,(7th Semester )B.Tech IT and mathematical > > innovation* > > > > > >>> >> *Cluster Innovation Centre* > > > > > >>> >> *University of Delhi * > > > > > >>> >> > > > > > >>> > > > > > >>> > > > > > >>> > > > > > >>> -- > > > > > >>> Stian Soiland-Reyes > > > > > >>> Apache Taverna (incubating), Apache Commons > > > > > >>> http://orcid.org/0000-0001-9842-9718 > > > > > >>> > > > > > >> > > > > > >> > > > > > >> > > > > > >> -- > > > > > >> > > > > > >> *With warm regards * > > > > > >> *Sincerely yours* > > > > > >> Sagar > > > > > >> > > > > > >> > > > > > >> *Student ,(7th Semester )B.Tech IT and mathematical innovation* > > > > > >> *Cluster Innovation Centre* > > > > > >> *University of Delhi * > > > > > >> > > > > > >> > > > > > > > > > > > > > > > > > > -- > > > > > > > > > > > > *With warm regards * > > > > > > *Sincerely yours* > > > > > > Sagar > > > > > > > > > > > > > > > > > > *Student ,(7th Semester )B.Tech IT and mathematical innovation* > > > > > > *Cluster Innovation Centre* > > > > > > *University of Delhi * > > > > > > > > > > > > > > > > > > > > -- > > > > > Stian Soiland-Reyes > > > > > http://orcid.org/0000-0001-9842-9718 > > > > > > > > > > > > > > > > > > > > -- > > > > *With warm regards * > > *Sincerely yours* > > Sagar > > > > > > *Student ,(7th Semester )B.Tech IT and mathematical innovation* > > *Cluster Innovation Centre* > > *University of Delhi * > > > -- *With warm regards * *Sincerely yours* Sagar *Student ,(7th Semester )B.Tech IT and mathematical innovation* *Cluster Innovation Centre* *University of Delhi *
