An alternative is to do something very similar to the maven-jaxb2-plugin in taverna-scufl2-t2flow
https://github.com/apache/incubator-taverna-language/blob/0.15.1-incubating/taverna-scufl2-t2flow/pom.xml#L43 with those schemas from https://github.com/apache/incubator-taverna-language/tree/0.15.1-incubating/taverna-scufl2-t2flow/src/main/resources/org/apache/taverna/scufl2/translator/t2flow/xsd (you should just need t2flow.xsd and t2annotations.xsd to get the MimeType annotations) If you generate that once, then you can also copy over the JAXB annotated Java source files from target/generated-sources - which perhaps is not best practice, but probably better than making a gradle/Maven mixed project. (Or find a jaxb plugin for gradle?) On 9 September 2016 at 08:00, Sagar <kumarsagar15...@gmail.com> wrote: > Hi, > > Here is the JDK requirement for different Android Version > https://source.android.com/source/requirements.html > > Currently taverna language api support JAVA 8 and newer but we need minimum > JAVA 6 and newer support to use taverna language api in taverna mobile for > API 16 (JellyBean). > > That's why we can't use taverna language api in taverna mobile. > > So, Can you provide me what are the input and output attribute in .t2flow > file to get their MIME ? > > > Thanks > > On Thu, Sep 8, 2016 at 11:54 PM, Gale Naylor <ga...@noventussolutions.com> > wrote: > >> Here is the distribution of Android API levels in use as of Aug 1: >> https://developer.android.com/about/dashboards/index.html >> >> According to this, only 15% of all Android devices are running API 23. >> >> >> On Thu, Sep 8, 2016 at 6:29 AM Ian Dunlop <ianwdun...@gmail.com> wrote: >> >> > Hello, >> > >> > That page is typically clear as mud! I think it is implying that jdk 7 is >> > fine for all API levels but for jdk 8 you need API 23 and (if special >> > language features required) a different compiler. So as long as we don't >> > use jdk 8 features we will be ok (maybe). I guess that means >> > taverna-language can be used (until we go all lambda crazy). >> > >> > Cheers, >> > >> > Ian >> > >> > On 8 September 2016 at 14:24, Stian Soiland-Reyes <st...@apache.org> >> > wrote: >> > >> > > I don't think we use any Java 8 features in taverna-language (e.g. >> > > Stream or lambdas) - but taverna-robundle use java.nio.Path from Java >> > > 7. I think it should be possible to make a subset of Taverna-language >> > > you need compile for JAva 6 (e.g. taverna-scufl2-api, >> > > taverna-scufl2-t2flow and taverna-scufl2-ucfpackage) - perhaps as a >> > > Maven profile? >> > > >> > > https://developer.android.com/guide/platform/j8-jack.html says you can >> > > use Java 7/8 features from API level 23-24. >> > > >> > > How do we decide which Android API level we want to support..? >> > > >> > > On 8 September 2016 at 10:56, Sagar <kumarsagar15...@gmail.com> wrote: >> > > > Hi, >> > > > >> > > > I was reading the readme and I found Taverna-language-API will only >> > work >> > > > with JAVA 8 and newer. >> > > > We can't use in taverna-mobile because Android API 16 works with JAVA >> > 6. >> > > > >> > > > So, Now provide me with the schema of the .t2flow file. >> > > > >> > > > Thanks >> > > > >> > > > On Thu, Sep 8, 2016 at 2:13 PM, Sagar <kumarsagar15...@gmail.com> >> > wrote: >> > > > >> > > >> Hi, >> > > >> >> > > >> How can I use the taverna-language API to know what will the inputs >> > and >> > > >> what will the outputs of workflow? >> > > >> >> > > >> I don't get any proper guide or code. >> > > >> >> > > >> Thanks >> > > >> >> > > >> On Fri, Sep 2, 2016 at 6:37 PM, Stian Soiland-Reyes < >> st...@apache.org >> > > >> > > >> wrote: >> > > >> >> > > >>> Yes, you should use taverna-language to load the .t2flow and >> inspect >> > > it. >> > > >>> >> > > >>> You should not really need to make any Java beans for it as the >> > > >>> workflow wouldn't be constructed on the phone (although you could >> do >> > > >>> that with the Taverna Language API), but loaded from $somewhere as >> > > >>> previously saved from the Taverna Workbench or downloaded from >> > > >>> myExperiment - however you can use the API to inspect the workflow, >> > > >>> e.g. list the input port names of the main workflow. >> > > >>> >> > > >>> >> > > >>> See: >> > > >>> >> > > >>> https://taverna.incubator.apache.org/download/language/ >> > > >>> >> > > >>> Javadoc: >> > > >>> https://taverna.incubator.apache.org/javadoc/taverna-languag >> > > >>> e/org/apache/taverna/scufl2/api/package-summary.html >> > > >>> >> > > >>> Example: >> > > >>> https://github.com/apache/incubator-taverna-language/blob/ >> > > >>> master/taverna-scufl2-examples/src/main/java/org/apache/ >> > > >>> taverna/examples/ProcessorNames.java >> > > >>> >> > > >>> On 29 August 2016 at 14:39, Ian Dunlop <ianwdun...@gmail.com> >> wrote: >> > > >>> > Hello, >> > > >>> > >> > > >>> > There is an xsd for t2flow available in the taverna-language >> module >> > > >>> > https://github.com/apache/incubator-taverna-language/blob/ >> > > >>> master/taverna-scufl2-t2flow/src/main/resources/org/apache/ >> > > >>> taverna/scufl2/translator/t2flow/xsd/t2flow.xsd >> > > >>> > You should be able to re-use taverna-language to parse t2flow >> > rather >> > > >>> than >> > > >>> > build your own parser. Perhaps using >> > > >>> > https://github.com/apache/incubator-taverna-language/tree/ >> > > >>> master/taverna-scufl2-t2flow. >> > > >>> > No readme though. Maybe some other devs can advise how to use it. >> > > >>> > >> > > >>> > Cheers, >> > > >>> > >> > > >>> > Ian >> > > >>> > >> > > >>> > On 28 August 2016 at 18:23, Sagar <kumarsagar15...@gmail.com> >> > wrote: >> > > >>> > >> > > >>> >> Hi, >> > > >>> >> >> > > >>> >> Is there any predefined tree structure for t2flow xml file ? >> > > >>> >> >> > > >>> >> if yes, then provide me so that I am able to create java beans >> for >> > > it. >> > > >>> >> otherwise, I will create it according to any t2flow xml file. >> > > >>> >> >> > > >>> >> Please revert ASAP. >> > > >>> >> >> > > >>> >> Thanks >> > > >>> >> >> > > >>> >> On Fri, Aug 26, 2016 at 3:54 PM, Finn Bacall < >> > > >>> finn.bac...@manchester.ac.uk >> > > >>> >> > >> > > >>> >> wrote: >> > > >>> >> >> > > >>> >> > This wouldn't be that hard to implement, you can get the >> unique >> > ID >> > > >>> for >> > > >>> >> the >> > > >>> >> > workflow from the parser gem, see: >> > > >>> >> > >> > > >>> >> > https://github.com/myExperiment/workflow_parser-t2flow/blob/ >> > > >>> >> > master/lib/t2flow/model.rb#L136 >> > > >>> >> > >> > > >>> >> > Then you'd just need to extract it in the parsing method: >> > > >>> >> > >> > > >>> >> > https://github.com/myGrid/taverna-player-portal/blob/master/ >> > > >>> >> > app/models/workflow.rb#L40 >> > > >>> >> > >> > > >>> >> > and store it in a new field in the database. >> > > >>> >> > >> > > >>> >> > Cheers, >> > > >>> >> > >> > > >>> >> > Finn >> > > >>> >> > >> > > >>> >> > >> > > >>> >> > On 26/08/2016 09:32, Ian Dunlop wrote: >> > > >>> >> > >> > > >>> >> >> Hello, >> > > >>> >> >> >> > > >>> >> >> I think you are pretty much spot on with your diagnosis. I >> > agree >> > > it >> > > >>> is a >> > > >>> >> >> bit of a pain that the workflow ids are different. However, >> > each >> > > >>> >> workflow >> > > >>> >> >> does have a unique uuid internally (with t2flow anyway) so >> that >> > > >>> could be >> > > >>> >> >> used to check if a workflow on myexperiment and the portal >> are >> > > the >> > > >>> same. >> > > >>> >> >> Look for the element <dataflow id="0f5e83c1-bbb5-42e7-9ba3- >> > > >>> >> 438f645d3d17" >> > > >>> >> >> role="top"> in a t2flow file. This probably means that the >> > portal >> > > >>> would >> > > >>> >> >> need an extension to search by workflow uuid. For now I would >> > > just >> > > >>> treat >> > > >>> >> >> each run as having a unique workflow and we can always >> improve >> > it >> > > >>> later. >> > > >>> >> >> >> > > >>> >> >> Cheers, >> > > >>> >> >> >> > > >>> >> >> Ian >> > > >>> >> >> >> > > >>> >> >> On 26 August 2016 at 08:02, Sagar <kumarsagar15...@gmail.com >> > >> > > >>> wrote: >> > > >>> >> >> >> > > >>> >> >> Hello, >> > > >>> >> >>> >> > > >>> >> >>> Thank you for providing code. Now, I am working on it. >> > > >>> >> >>> >> > > >>> >> >>> Currently, I have understood that I need following steps to >> > run >> > > a >> > > >>> >> >>> workflow >> > > >>> >> >>> on taverna player portal >> > > >>> >> >>> >> > > >>> >> >>> 1) Download workflow content. >> > > >>> >> >>> 2) Upload it to taverna player portal. >> > > >>> >> >>> 3) Run it on taverna player portal. >> > > >>> >> >>> 4) Show output of the complete workflow's run. >> > > >>> >> >>> >> > > >>> >> >>> I have also understood that there is no link between >> > > myExperiment >> > > >>> >> >>> workflow >> > > >>> >> >>> and Taverna Player workflow that's why I can't retain >> > > >>> myExperiment's >> > > >>> >> >>> workflow running history on Taverna player portal and also I >> > > can't >> > > >>> >> search >> > > >>> >> >>> the same workflow in taverna player portal. For each new >> run, >> > I >> > > >>> have to >> > > >>> >> >>> upload it again. >> > > >>> >> >>> >> > > >>> >> >>> >> > > >>> >> >>> If I have understood correct then Please revert back . >> > > >>> >> >>> >> > > >>> >> >>> If not then, Please correct me. >> > > >>> >> >>> >> > > >>> >> >>> Thanks >> > > >>> >> >>> >> > > >>> >> >>> >> > > >>> >> >>> On Wed, Aug 24, 2016 at 8:48 PM, Ian Dunlop < >> > > ianwdun...@gmail.com> >> > > >>> >> >>> wrote: >> > > >>> >> >>> >> > > >>> >> >>> Hello, >> > > >>> >> >>>> >> > > >>> >> >>>> This is where the upload code is in the current mobile code >> > > >>> >> >>>> https://github.com/apache/incubator-taverna-mobile/blob/ >> > > >>> >> >>>> 4daa91d3f42b5a4474303fd39c7a7e >> c1483cebff/app/src/main/java/ >> > > >>> >> >>>> org/apache/taverna/mobile/fragments/workflowdetails/ >> > > >>> >> >>>> WorkflowdetailFragment.java#L655 >> > > >>> >> >>>> >> > > >>> >> >>>> Cheers, >> > > >>> >> >>>> >> > > >>> >> >>>> Ian >> > > >>> >> >>>> >> > > >>> >> >>>> On 24 August 2016 at 14:40, Ian Dunlop < >> ianwdun...@gmail.com >> > > >> > > >>> wrote: >> > > >>> >> >>>> >> > > >>> >> >>>> Hello, >> > > >>> >> >>>>> >> > > >>> >> >>>>> That upload code should already be available in the mobile >> > > app. >> > > >>> >> Larry, >> > > >>> >> >>>>> myself and Finn spent a few hours figuring all that stuff >> > out >> > > >>> last >> > > >>> >> time >> > > >>> >> >>>>> round. >> > > >>> >> >>>>> I have added an API call in the taverna-player-portal to >> get >> > > the >> > > >>> runs >> > > >>> >> >>>>> >> > > >>> >> >>>> for >> > > >>> >> >>> >> > > >>> >> >>>> a user eg /users/1/runs. Pull request waiting in github >> (hint >> > > hint >> > > >>> >> >>>>> >> > > >>> >> >>>> Finn). I >> > > >>> >> >>>> >> > > >>> >> >>>>> even added some tests. >> > > >>> >> >>>>> >> > > >>> >> >>>>> Cheers, >> > > >>> >> >>>>> >> > > >>> >> >>>>> Ian >> > > >>> >> >>>>> >> > > >>> >> >>>>> On 24 August 2016 at 10:57, Finn Bacall < >> > > >>> >> finn.bac...@manchester.ac.uk> >> > > >>> >> >>>>> wrote: >> > > >>> >> >>>>> >> > > >>> >> >>>>> On 23/08/2016 11:38, Sagar wrote: >> > > >>> >> >>>>>> >> > > >>> >> >>>>>> Hi, >> > > >>> >> >>>>>>> >> > > >>> >> >>>>>>> I think there is some problem as mention below >> > > >>> >> >>>>>>> >> > > >>> >> >>>>>>> 1) How can I upload a workflow using API ? >> > > >>> >> >>>>>>> >> > > >>> >> >>>>>>> here's a gist of some Java code someone wrote to upload >> a >> > > >>> workflow >> > > >>> >> to >> > > >>> >> >>>>>> >> > > >>> >> >>>>> the >> > > >>> >> >>>> >> > > >>> >> >>>>> portal: >> > > >>> >> >>>>>> https://gist.github.com/larrytech7/957cc61a3bdd82e3e030 >> > > >>> >> >>>>>> >> > > >>> >> >>>>>> Basically the format is: >> > > >>> >> >>>>>> >> > > >>> >> >>>>>> { "workflow" : { "document" : >> "data:application/octet- >> > > >>> >> >>>>>> >> > > >>> >> >>>>> stream;base64,<<<Insert >> > > >>> >> >>>> >> > > >>> >> >>>>> base64 encoded workflow here>>>" } } >> > > >>> >> >>>>>> >> > > >>> >> >>>>>> Finn >> > > >>> >> >>>>>> >> > > >>> >> >>>>>> >> > > >>> >> >>>>> >> > > >>> >> >>> >> > > >>> >> >>> -- >> > > >>> >> >>> >> > > >>> >> >>> *With warm regards * >> > > >>> >> >>> *Sincerely yours* >> > > >>> >> >>> Sagar >> > > >>> >> >>> >> > > >>> >> >>> >> > > >>> >> >>> *Student ,(7th Semester )B.Tech IT and mathematical >> > innovation* >> > > >>> >> >>> *Cluster Innovation Centre* >> > > >>> >> >>> *University of Delhi * >> > > >>> >> >>> >> > > >>> >> >>> >> > > >>> >> > >> > > >>> >> >> > > >>> >> >> > > >>> >> -- >> > > >>> >> >> > > >>> >> *With warm regards * >> > > >>> >> *Sincerely yours* >> > > >>> >> Sagar >> > > >>> >> >> > > >>> >> >> > > >>> >> *Student ,(7th Semester )B.Tech IT and mathematical innovation* >> > > >>> >> *Cluster Innovation Centre* >> > > >>> >> *University of Delhi * >> > > >>> >> >> > > >>> >> > > >>> >> > > >>> >> > > >>> -- >> > > >>> Stian Soiland-Reyes >> > > >>> Apache Taverna (incubating), Apache Commons >> > > >>> http://orcid.org/0000-0001-9842-9718 >> > > >>> >> > > >> >> > > >> >> > > >> >> > > >> -- >> > > >> >> > > >> *With warm regards * >> > > >> *Sincerely yours* >> > > >> Sagar >> > > >> >> > > >> >> > > >> *Student ,(7th Semester )B.Tech IT and mathematical innovation* >> > > >> *Cluster Innovation Centre* >> > > >> *University of Delhi * >> > > >> >> > > >> >> > > > >> > > > >> > > > -- >> > > > >> > > > *With warm regards * >> > > > *Sincerely yours* >> > > > Sagar >> > > > >> > > > >> > > > *Student ,(7th Semester )B.Tech IT and mathematical innovation* >> > > > *Cluster Innovation Centre* >> > > > *University of Delhi * >> > > >> > > >> > > >> > > -- >> > > Stian Soiland-Reyes >> > > http://orcid.org/0000-0001-9842-9718 >> > > >> > >> > > > > -- > > *With warm regards * > *Sincerely yours* > Sagar > > > *Student ,(7th Semester )B.Tech IT and mathematical innovation* > *Cluster Innovation Centre* > *University of Delhi * -- Stian Soiland-Reyes http://orcid.org/0000-0001-9842-9718
