Hello,

@sagar did you use the maven profile idea? If so could you send a pull
request so that we can keep this for the future.

I've never used the scufl2-api. I did find
https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/core/Workflow.html#getInputPorts--
which has
https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/common/Named.html#getName--
I remember from way back that the mime types were hidden inside an
annotation on the port. So maybe try
https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/common/AbstractNamed.html#getAnnotations--
and have a look at what is there.

Cheers,

Ian

On 15 September 2016 at 10:36, Sagar <kumarsagar15...@gmail.com> wrote:

> Hi,
>
> I have build taverna-scufl2-api as jar using java 7 .
>
> Can you tell me how to use it to get all input and output MIME type and
> their name?
>
>
> On Mon, Sep 12, 2016 at 6:05 PM, Stian Soiland-Reyes <st...@apache.org>
> wrote:
>
> > Thanks - from this I would say Taverna Mobile can target KitKat (API
> > level 19), get 80% share - which would rise by the time we release the
> > app.
> >
> > But that still grounds us on Java 6 features - and even in latest
> > Android SDK API the package java.nio.file is not there - so robundle
> > would not work anyway.
> >
> > On 8 September 2016 at 19:24, Gale Naylor <ga...@noventussolutions.com>
> > wrote:
> > > Here is the distribution of Android API levels in use as of Aug 1:
> > > https://developer.android.com/about/dashboards/index.html
> > >
> > > According to this, only 15% of all Android devices are running API 23.
> > >
> > >
> > > On Thu, Sep 8, 2016 at 6:29 AM Ian Dunlop <ianwdun...@gmail.com>
> wrote:
> > >
> > >> Hello,
> > >>
> > >> That page is typically clear as mud! I think it is implying that jdk 7
> > is
> > >> fine for all API levels but for jdk 8 you need API 23 and (if special
> > >> language features required) a different compiler. So as long as we
> don't
> > >> use jdk 8 features we will be ok (maybe).  I guess that means
> > >> taverna-language can be used (until we go all lambda crazy).
> > >>
> > >> Cheers,
> > >>
> > >> Ian
> > >>
> > >> On 8 September 2016 at 14:24, Stian Soiland-Reyes <st...@apache.org>
> > >> wrote:
> > >>
> > >> > I don't think we use any Java 8 features in taverna-language (e.g.
> > >> > Stream or lambdas) - but taverna-robundle use java.nio.Path from
> Java
> > >> > 7.  I think it should be possible to make a subset of
> Taverna-language
> > >> > you need compile for JAva 6 (e.g. taverna-scufl2-api,
> > >> > taverna-scufl2-t2flow and taverna-scufl2-ucfpackage) - perhaps as a
> > >> > Maven profile?
> > >> >
> > >> > https://developer.android.com/guide/platform/j8-jack.html says you
> > can
> > >> > use Java 7/8 features from API level 23-24.
> > >> >
> > >> > How do we decide which Android API level we want to support..?
> > >> >
> > >> > On 8 September 2016 at 10:56, Sagar <kumarsagar15...@gmail.com>
> > wrote:
> > >> > > Hi,
> > >> > >
> > >> > > I was reading the readme and I found Taverna-language-API will
> only
> > >> work
> > >> > > with JAVA 8 and newer.
> > >> > > We can't use in taverna-mobile because Android API 16 works with
> > JAVA
> > >> 6.
> > >> > >
> > >> > > So, Now provide me with the schema of the .t2flow file.
> > >> > >
> > >> > > Thanks
> > >> > >
> > >> > > On Thu, Sep 8, 2016 at 2:13 PM, Sagar <kumarsagar15...@gmail.com>
> > >> wrote:
> > >> > >
> > >> > >> Hi,
> > >> > >>
> > >> > >> How can I use the taverna-language API to know what will the
> inputs
> > >> and
> > >> > >> what will the outputs of workflow?
> > >> > >>
> > >> > >> I don't get any proper guide or code.
> > >> > >>
> > >> > >> Thanks
> > >> > >>
> > >> > >> On Fri, Sep 2, 2016 at 6:37 PM, Stian Soiland-Reyes <
> > st...@apache.org
> > >> >
> > >> > >> wrote:
> > >> > >>
> > >> > >>> Yes, you should use taverna-language to load the .t2flow and
> > inspect
> > >> > it.
> > >> > >>>
> > >> > >>> You should not really need to make any Java beans for it as the
> > >> > >>> workflow wouldn't be constructed on the phone (although you
> could
> > do
> > >> > >>> that with the Taverna Language API), but loaded from $somewhere
> as
> > >> > >>> previously saved from the Taverna Workbench or downloaded from
> > >> > >>> myExperiment - however you can use the API to inspect the
> > workflow,
> > >> > >>> e.g. list the input port names of the main workflow.
> > >> > >>>
> > >> > >>>
> > >> > >>> See:
> > >> > >>>
> > >> > >>> https://taverna.incubator.apache.org/download/language/
> > >> > >>>
> > >> > >>> Javadoc:
> > >> > >>> https://taverna.incubator.apache.org/javadoc/taverna-languag
> > >> > >>> e/org/apache/taverna/scufl2/api/package-summary.html
> > >> > >>>
> > >> > >>> Example:
> > >> > >>> https://github.com/apache/incubator-taverna-language/blob/
> > >> > >>> master/taverna-scufl2-examples/src/main/java/org/apache/
> > >> > >>> taverna/examples/ProcessorNames.java
> > >> > >>>
> > >> > >>> On 29 August 2016 at 14:39, Ian Dunlop <ianwdun...@gmail.com>
> > wrote:
> > >> > >>> > Hello,
> > >> > >>> >
> > >> > >>> > There is an xsd for t2flow available in the taverna-language
> > module
> > >> > >>> > https://github.com/apache/incubator-taverna-language/blob/
> > >> > >>> master/taverna-scufl2-t2flow/src/main/resources/org/apache/
> > >> > >>> taverna/scufl2/translator/t2flow/xsd/t2flow.xsd
> > >> > >>> > You should be able to re-use taverna-language to parse t2flow
> > >> rather
> > >> > >>> than
> > >> > >>> > build your own parser. Perhaps using
> > >> > >>> > https://github.com/apache/incubator-taverna-language/tree/
> > >> > >>> master/taverna-scufl2-t2flow.
> > >> > >>> > No readme though. Maybe some other devs can advise how to use
> > it.
> > >> > >>> >
> > >> > >>> > Cheers,
> > >> > >>> >
> > >> > >>> > Ian
> > >> > >>> >
> > >> > >>> > On 28 August 2016 at 18:23, Sagar <kumarsagar15...@gmail.com>
> > >> wrote:
> > >> > >>> >
> > >> > >>> >> Hi,
> > >> > >>> >>
> > >> > >>> >> Is there any predefined tree structure for t2flow xml file ?
> > >> > >>> >>
> > >> > >>> >> if yes, then provide me so that I am able to create java
> beans
> > for
> > >> > it.
> > >> > >>> >> otherwise, I will create it according to any t2flow xml file.
> > >> > >>> >>
> > >> > >>> >> Please revert ASAP.
> > >> > >>> >>
> > >> > >>> >> Thanks
> > >> > >>> >>
> > >> > >>> >> On Fri, Aug 26, 2016 at 3:54 PM, Finn Bacall <
> > >> > >>> finn.bac...@manchester.ac.uk
> > >> > >>> >> >
> > >> > >>> >> wrote:
> > >> > >>> >>
> > >> > >>> >> > This wouldn't be that hard to implement, you can get the
> > unique
> > >> ID
> > >> > >>> for
> > >> > >>> >> the
> > >> > >>> >> > workflow from the parser gem, see:
> > >> > >>> >> >
> > >> > >>> >> > https://github.com/myExperiment/workflow_parser-
> t2flow/blob/
> > >> > >>> >> > master/lib/t2flow/model.rb#L136
> > >> > >>> >> >
> > >> > >>> >> > Then you'd just need to extract it in the parsing method:
> > >> > >>> >> >
> > >> > >>> >> > https://github.com/myGrid/taverna-player-portal/blob/
> master/
> > >> > >>> >> > app/models/workflow.rb#L40
> > >> > >>> >> >
> > >> > >>> >> > and store it in a new field in the database.
> > >> > >>> >> >
> > >> > >>> >> > Cheers,
> > >> > >>> >> >
> > >> > >>> >> > Finn
> > >> > >>> >> >
> > >> > >>> >> >
> > >> > >>> >> > On 26/08/2016 09:32, Ian Dunlop wrote:
> > >> > >>> >> >
> > >> > >>> >> >> Hello,
> > >> > >>> >> >>
> > >> > >>> >> >> I think you are pretty much spot on with your diagnosis. I
> > >> agree
> > >> > it
> > >> > >>> is a
> > >> > >>> >> >> bit of a pain that the workflow ids are different.
> However,
> > >> each
> > >> > >>> >> workflow
> > >> > >>> >> >> does have a unique uuid internally (with t2flow anyway) so
> > that
> > >> > >>> could be
> > >> > >>> >> >> used to check if a workflow on myexperiment and the portal
> > are
> > >> > the
> > >> > >>> same.
> > >> > >>> >> >> Look for the element <dataflow
> id="0f5e83c1-bbb5-42e7-9ba3-
> > >> > >>> >> 438f645d3d17"
> > >> > >>> >> >> role="top"> in a t2flow file. This probably means that the
> > >> portal
> > >> > >>> would
> > >> > >>> >> >> need an extension to search by workflow uuid. For now I
> > would
> > >> > just
> > >> > >>> treat
> > >> > >>> >> >> each run as having a unique workflow and we can always
> > improve
> > >> it
> > >> > >>> later.
> > >> > >>> >> >>
> > >> > >>> >> >> Cheers,
> > >> > >>> >> >>
> > >> > >>> >> >> Ian
> > >> > >>> >> >>
> > >> > >>> >> >> On 26 August 2016 at 08:02, Sagar <
> > kumarsagar15...@gmail.com>
> > >> > >>> wrote:
> > >> > >>> >> >>
> > >> > >>> >> >> Hello,
> > >> > >>> >> >>>
> > >> > >>> >> >>> Thank you for providing code. Now, I am working on it.
> > >> > >>> >> >>>
> > >> > >>> >> >>> Currently, I have understood that I need following steps
> to
> > >> run
> > >> > a
> > >> > >>> >> >>> workflow
> > >> > >>> >> >>> on taverna player portal
> > >> > >>> >> >>>
> > >> > >>> >> >>> 1) Download workflow content.
> > >> > >>> >> >>> 2) Upload it to taverna player portal.
> > >> > >>> >> >>> 3) Run it on taverna player portal.
> > >> > >>> >> >>> 4) Show output of the complete workflow's run.
> > >> > >>> >> >>>
> > >> > >>> >> >>> I have also understood that there is no link between
> > >> > myExperiment
> > >> > >>> >> >>> workflow
> > >> > >>> >> >>> and Taverna Player workflow that's why I can't retain
> > >> > >>> myExperiment's
> > >> > >>> >> >>> workflow running history on Taverna player portal and
> also
> > I
> > >> > can't
> > >> > >>> >> search
> > >> > >>> >> >>> the same workflow in taverna player portal. For each new
> > run,
> > >> I
> > >> > >>> have to
> > >> > >>> >> >>> upload it again.
> > >> > >>> >> >>>
> > >> > >>> >> >>>
> > >> > >>> >> >>> If I have understood correct then Please revert back .
> > >> > >>> >> >>>
> > >> > >>> >> >>> If not then, Please correct me.
> > >> > >>> >> >>>
> > >> > >>> >> >>> Thanks
> > >> > >>> >> >>>
> > >> > >>> >> >>>
> > >> > >>> >> >>> On Wed, Aug 24, 2016 at 8:48 PM, Ian Dunlop <
> > >> > ianwdun...@gmail.com>
> > >> > >>> >> >>> wrote:
> > >> > >>> >> >>>
> > >> > >>> >> >>> Hello,
> > >> > >>> >> >>>>
> > >> > >>> >> >>>> This is where the upload code is in the current mobile
> > code
> > >> > >>> >> >>>> https://github.com/apache/
> incubator-taverna-mobile/blob/
> > >> > >>> >> >>>> 4daa91d3f42b5a4474303fd39c7a7e
> > c1483cebff/app/src/main/java/
> > >> > >>> >> >>>> org/apache/taverna/mobile/fragments/workflowdetails/
> > >> > >>> >> >>>> WorkflowdetailFragment.java#L655
> > >> > >>> >> >>>>
> > >> > >>> >> >>>> Cheers,
> > >> > >>> >> >>>>
> > >> > >>> >> >>>> Ian
> > >> > >>> >> >>>>
> > >> > >>> >> >>>> On 24 August 2016 at 14:40, Ian Dunlop <
> > ianwdun...@gmail.com
> > >> >
> > >> > >>> wrote:
> > >> > >>> >> >>>>
> > >> > >>> >> >>>> Hello,
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>>> That upload code should already be available in the
> > mobile
> > >> > app.
> > >> > >>> >> Larry,
> > >> > >>> >> >>>>> myself and Finn spent a few hours figuring all that
> stuff
> > >> out
> > >> > >>> last
> > >> > >>> >> time
> > >> > >>> >> >>>>> round.
> > >> > >>> >> >>>>> I have added an API call in the taverna-player-portal
> to
> > get
> > >> > the
> > >> > >>> runs
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>> for
> > >> > >>> >> >>>
> > >> > >>> >> >>>> a user eg /users/1/runs. Pull request waiting in github
> > (hint
> > >> > hint
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>> Finn). I
> > >> > >>> >> >>>>
> > >> > >>> >> >>>>> even added some tests.
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>>> Cheers,
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>>> Ian
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>>> On 24 August 2016 at 10:57, Finn Bacall <
> > >> > >>> >> finn.bac...@manchester.ac.uk>
> > >> > >>> >> >>>>> wrote:
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>>> On 23/08/2016 11:38, Sagar wrote:
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>>> Hi,
> > >> > >>> >> >>>>>>>
> > >> > >>> >> >>>>>>> I think there is some problem as mention below
> > >> > >>> >> >>>>>>>
> > >> > >>> >> >>>>>>> 1) How can I upload a workflow using API ?
> > >> > >>> >> >>>>>>>
> > >> > >>> >> >>>>>>> here's a gist of some Java code someone wrote to
> > upload a
> > >> > >>> workflow
> > >> > >>> >> to
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>> the
> > >> > >>> >> >>>>
> > >> > >>> >> >>>>> portal:
> > >> > >>> >> >>>>>> https://gist.github.com/larrytech7/
> 957cc61a3bdd82e3e030
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>>> Basically the format is:
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>>>      { "workflow" : { "document" :
> > "data:application/octet-
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>> stream;base64,<<<Insert
> > >> > >>> >> >>>>
> > >> > >>> >> >>>>> base64 encoded workflow here>>>" } }
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>>> Finn
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>>>
> > >> > >>> >> >>>>>
> > >> > >>> >> >>>
> > >> > >>> >> >>> --
> > >> > >>> >> >>>
> > >> > >>> >> >>> *With warm regards  *
> > >> > >>> >> >>> *Sincerely yours*
> > >> > >>> >> >>> Sagar
> > >> > >>> >> >>>
> > >> > >>> >> >>>
> > >> > >>> >> >>> *Student ,(7th Semester )B.Tech IT and mathematical
> > >> innovation*
> > >> > >>> >> >>> *Cluster Innovation Centre*
> > >> > >>> >> >>> *University of Delhi *
> > >> > >>> >> >>>
> > >> > >>> >> >>>
> > >> > >>> >> >
> > >> > >>> >>
> > >> > >>> >>
> > >> > >>> >> --
> > >> > >>> >>
> > >> > >>> >> *With warm regards  *
> > >> > >>> >> *Sincerely yours*
> > >> > >>> >> Sagar
> > >> > >>> >>
> > >> > >>> >>
> > >> > >>> >> *Student ,(7th Semester )B.Tech IT and mathematical
> innovation*
> > >> > >>> >> *Cluster Innovation Centre*
> > >> > >>> >> *University of Delhi *
> > >> > >>> >>
> > >> > >>>
> > >> > >>>
> > >> > >>>
> > >> > >>> --
> > >> > >>> Stian Soiland-Reyes
> > >> > >>> Apache Taverna (incubating), Apache Commons
> > >> > >>> http://orcid.org/0000-0001-9842-9718
> > >> > >>>
> > >> > >>
> > >> > >>
> > >> > >>
> > >> > >> --
> > >> > >>
> > >> > >> *With warm regards  *
> > >> > >> *Sincerely yours*
> > >> > >> Sagar
> > >> > >>
> > >> > >>
> > >> > >> *Student ,(7th Semester )B.Tech IT and mathematical innovation*
> > >> > >> *Cluster Innovation Centre*
> > >> > >> *University of Delhi *
> > >> > >>
> > >> > >>
> > >> > >
> > >> > >
> > >> > > --
> > >> > >
> > >> > > *With warm regards  *
> > >> > > *Sincerely yours*
> > >> > > Sagar
> > >> > >
> > >> > >
> > >> > > *Student ,(7th Semester )B.Tech IT and mathematical innovation*
> > >> > > *Cluster Innovation Centre*
> > >> > > *University of Delhi *
> > >> >
> > >> >
> > >> >
> > >> > --
> > >> > Stian Soiland-Reyes
> > >> > http://orcid.org/0000-0001-9842-9718
> > >> >
> > >>
> >
> >
> >
> > --
> > Stian Soiland-Reyes
> > http://orcid.org/0000-0001-9842-9718
> >
>
>
>
> --
>
> *With warm regards  *
> *Sincerely yours*
> Sagar
>
>
> *Student ,(7th Semester )B.Tech IT and mathematical innovation*
> *Cluster Innovation Centre*
> *University of Delhi *
>

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