I think you won't get the annotation content for the mimetype without also using https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/annotation/AnnotationTools.html
but that would add dependency on Jena, which latest versions require Java 7 and I'm not sure if it works well on Android. Perhaps using just the XSD mapping from taverna-scufl2-t2flow would be a bit easier? You still need to trundle through the annotations which in .t2flow were serialized in a perhaps awkward way (an annotation chain which then contains a set of revisioned annotations). On 15 September 2016 at 11:29, Ian Dunlop <[email protected]> wrote: > Hello, > > @sagar did you use the maven profile idea? If so could you send a pull > request so that we can keep this for the future. > > I've never used the scufl2-api. I did find > https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/core/Workflow.html#getInputPorts-- > which has > https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/common/Named.html#getName-- > I remember from way back that the mime types were hidden inside an > annotation on the port. So maybe try > https://taverna.incubator.apache.org/javadoc/taverna-language/org/apache/taverna/scufl2/api/common/AbstractNamed.html#getAnnotations-- > and have a look at what is there. > > Cheers, > > Ian > > On 15 September 2016 at 10:36, Sagar <[email protected]> wrote: > >> Hi, >> >> I have build taverna-scufl2-api as jar using java 7 . >> >> Can you tell me how to use it to get all input and output MIME type and >> their name? >> >> >> On Mon, Sep 12, 2016 at 6:05 PM, Stian Soiland-Reyes <[email protected]> >> wrote: >> >> > Thanks - from this I would say Taverna Mobile can target KitKat (API >> > level 19), get 80% share - which would rise by the time we release the >> > app. >> > >> > But that still grounds us on Java 6 features - and even in latest >> > Android SDK API the package java.nio.file is not there - so robundle >> > would not work anyway. >> > >> > On 8 September 2016 at 19:24, Gale Naylor <[email protected]> >> > wrote: >> > > Here is the distribution of Android API levels in use as of Aug 1: >> > > https://developer.android.com/about/dashboards/index.html >> > > >> > > According to this, only 15% of all Android devices are running API 23. >> > > >> > > >> > > On Thu, Sep 8, 2016 at 6:29 AM Ian Dunlop <[email protected]> >> wrote: >> > > >> > >> Hello, >> > >> >> > >> That page is typically clear as mud! I think it is implying that jdk 7 >> > is >> > >> fine for all API levels but for jdk 8 you need API 23 and (if special >> > >> language features required) a different compiler. So as long as we >> don't >> > >> use jdk 8 features we will be ok (maybe). I guess that means >> > >> taverna-language can be used (until we go all lambda crazy). >> > >> >> > >> Cheers, >> > >> >> > >> Ian >> > >> >> > >> On 8 September 2016 at 14:24, Stian Soiland-Reyes <[email protected]> >> > >> wrote: >> > >> >> > >> > I don't think we use any Java 8 features in taverna-language (e.g. >> > >> > Stream or lambdas) - but taverna-robundle use java.nio.Path from >> Java >> > >> > 7. I think it should be possible to make a subset of >> Taverna-language >> > >> > you need compile for JAva 6 (e.g. taverna-scufl2-api, >> > >> > taverna-scufl2-t2flow and taverna-scufl2-ucfpackage) - perhaps as a >> > >> > Maven profile? >> > >> > >> > >> > https://developer.android.com/guide/platform/j8-jack.html says you >> > can >> > >> > use Java 7/8 features from API level 23-24. >> > >> > >> > >> > How do we decide which Android API level we want to support..? >> > >> > >> > >> > On 8 September 2016 at 10:56, Sagar <[email protected]> >> > wrote: >> > >> > > Hi, >> > >> > > >> > >> > > I was reading the readme and I found Taverna-language-API will >> only >> > >> work >> > >> > > with JAVA 8 and newer. >> > >> > > We can't use in taverna-mobile because Android API 16 works with >> > JAVA >> > >> 6. >> > >> > > >> > >> > > So, Now provide me with the schema of the .t2flow file. >> > >> > > >> > >> > > Thanks >> > >> > > >> > >> > > On Thu, Sep 8, 2016 at 2:13 PM, Sagar <[email protected]> >> > >> wrote: >> > >> > > >> > >> > >> Hi, >> > >> > >> >> > >> > >> How can I use the taverna-language API to know what will the >> inputs >> > >> and >> > >> > >> what will the outputs of workflow? >> > >> > >> >> > >> > >> I don't get any proper guide or code. >> > >> > >> >> > >> > >> Thanks >> > >> > >> >> > >> > >> On Fri, Sep 2, 2016 at 6:37 PM, Stian Soiland-Reyes < >> > [email protected] >> > >> > >> > >> > >> wrote: >> > >> > >> >> > >> > >>> Yes, you should use taverna-language to load the .t2flow and >> > inspect >> > >> > it. >> > >> > >>> >> > >> > >>> You should not really need to make any Java beans for it as the >> > >> > >>> workflow wouldn't be constructed on the phone (although you >> could >> > do >> > >> > >>> that with the Taverna Language API), but loaded from $somewhere >> as >> > >> > >>> previously saved from the Taverna Workbench or downloaded from >> > >> > >>> myExperiment - however you can use the API to inspect the >> > workflow, >> > >> > >>> e.g. list the input port names of the main workflow. >> > >> > >>> >> > >> > >>> >> > >> > >>> See: >> > >> > >>> >> > >> > >>> https://taverna.incubator.apache.org/download/language/ >> > >> > >>> >> > >> > >>> Javadoc: >> > >> > >>> https://taverna.incubator.apache.org/javadoc/taverna-languag >> > >> > >>> e/org/apache/taverna/scufl2/api/package-summary.html >> > >> > >>> >> > >> > >>> Example: >> > >> > >>> https://github.com/apache/incubator-taverna-language/blob/ >> > >> > >>> master/taverna-scufl2-examples/src/main/java/org/apache/ >> > >> > >>> taverna/examples/ProcessorNames.java >> > >> > >>> >> > >> > >>> On 29 August 2016 at 14:39, Ian Dunlop <[email protected]> >> > wrote: >> > >> > >>> > Hello, >> > >> > >>> > >> > >> > >>> > There is an xsd for t2flow available in the taverna-language >> > module >> > >> > >>> > https://github.com/apache/incubator-taverna-language/blob/ >> > >> > >>> master/taverna-scufl2-t2flow/src/main/resources/org/apache/ >> > >> > >>> taverna/scufl2/translator/t2flow/xsd/t2flow.xsd >> > >> > >>> > You should be able to re-use taverna-language to parse t2flow >> > >> rather >> > >> > >>> than >> > >> > >>> > build your own parser. Perhaps using >> > >> > >>> > https://github.com/apache/incubator-taverna-language/tree/ >> > >> > >>> master/taverna-scufl2-t2flow. >> > >> > >>> > No readme though. Maybe some other devs can advise how to use >> > it. >> > >> > >>> > >> > >> > >>> > Cheers, >> > >> > >>> > >> > >> > >>> > Ian >> > >> > >>> > >> > >> > >>> > On 28 August 2016 at 18:23, Sagar <[email protected]> >> > >> wrote: >> > >> > >>> > >> > >> > >>> >> Hi, >> > >> > >>> >> >> > >> > >>> >> Is there any predefined tree structure for t2flow xml file ? >> > >> > >>> >> >> > >> > >>> >> if yes, then provide me so that I am able to create java >> beans >> > for >> > >> > it. >> > >> > >>> >> otherwise, I will create it according to any t2flow xml file. >> > >> > >>> >> >> > >> > >>> >> Please revert ASAP. >> > >> > >>> >> >> > >> > >>> >> Thanks >> > >> > >>> >> >> > >> > >>> >> On Fri, Aug 26, 2016 at 3:54 PM, Finn Bacall < >> > >> > >>> [email protected] >> > >> > >>> >> > >> > >> > >>> >> wrote: >> > >> > >>> >> >> > >> > >>> >> > This wouldn't be that hard to implement, you can get the >> > unique >> > >> ID >> > >> > >>> for >> > >> > >>> >> the >> > >> > >>> >> > workflow from the parser gem, see: >> > >> > >>> >> > >> > >> > >>> >> > https://github.com/myExperiment/workflow_parser- >> t2flow/blob/ >> > >> > >>> >> > master/lib/t2flow/model.rb#L136 >> > >> > >>> >> > >> > >> > >>> >> > Then you'd just need to extract it in the parsing method: >> > >> > >>> >> > >> > >> > >>> >> > https://github.com/myGrid/taverna-player-portal/blob/ >> master/ >> > >> > >>> >> > app/models/workflow.rb#L40 >> > >> > >>> >> > >> > >> > >>> >> > and store it in a new field in the database. >> > >> > >>> >> > >> > >> > >>> >> > Cheers, >> > >> > >>> >> > >> > >> > >>> >> > Finn >> > >> > >>> >> > >> > >> > >>> >> > >> > >> > >>> >> > On 26/08/2016 09:32, Ian Dunlop wrote: >> > >> > >>> >> > >> > >> > >>> >> >> Hello, >> > >> > >>> >> >> >> > >> > >>> >> >> I think you are pretty much spot on with your diagnosis. I >> > >> agree >> > >> > it >> > >> > >>> is a >> > >> > >>> >> >> bit of a pain that the workflow ids are different. >> However, >> > >> each >> > >> > >>> >> workflow >> > >> > >>> >> >> does have a unique uuid internally (with t2flow anyway) so >> > that >> > >> > >>> could be >> > >> > >>> >> >> used to check if a workflow on myexperiment and the portal >> > are >> > >> > the >> > >> > >>> same. >> > >> > >>> >> >> Look for the element <dataflow >> id="0f5e83c1-bbb5-42e7-9ba3- >> > >> > >>> >> 438f645d3d17" >> > >> > >>> >> >> role="top"> in a t2flow file. This probably means that the >> > >> portal >> > >> > >>> would >> > >> > >>> >> >> need an extension to search by workflow uuid. For now I >> > would >> > >> > just >> > >> > >>> treat >> > >> > >>> >> >> each run as having a unique workflow and we can always >> > improve >> > >> it >> > >> > >>> later. >> > >> > >>> >> >> >> > >> > >>> >> >> Cheers, >> > >> > >>> >> >> >> > >> > >>> >> >> Ian >> > >> > >>> >> >> >> > >> > >>> >> >> On 26 August 2016 at 08:02, Sagar < >> > [email protected]> >> > >> > >>> wrote: >> > >> > >>> >> >> >> > >> > >>> >> >> Hello, >> > >> > >>> >> >>> >> > >> > >>> >> >>> Thank you for providing code. Now, I am working on it. >> > >> > >>> >> >>> >> > >> > >>> >> >>> Currently, I have understood that I need following steps >> to >> > >> run >> > >> > a >> > >> > >>> >> >>> workflow >> > >> > >>> >> >>> on taverna player portal >> > >> > >>> >> >>> >> > >> > >>> >> >>> 1) Download workflow content. >> > >> > >>> >> >>> 2) Upload it to taverna player portal. >> > >> > >>> >> >>> 3) Run it on taverna player portal. >> > >> > >>> >> >>> 4) Show output of the complete workflow's run. >> > >> > >>> >> >>> >> > >> > >>> >> >>> I have also understood that there is no link between >> > >> > myExperiment >> > >> > >>> >> >>> workflow >> > >> > >>> >> >>> and Taverna Player workflow that's why I can't retain >> > >> > >>> myExperiment's >> > >> > >>> >> >>> workflow running history on Taverna player portal and >> also >> > I >> > >> > can't >> > >> > >>> >> search >> > >> > >>> >> >>> the same workflow in taverna player portal. For each new >> > run, >> > >> I >> > >> > >>> have to >> > >> > >>> >> >>> upload it again. >> > >> > >>> >> >>> >> > >> > >>> >> >>> >> > >> > >>> >> >>> If I have understood correct then Please revert back . >> > >> > >>> >> >>> >> > >> > >>> >> >>> If not then, Please correct me. >> > >> > >>> >> >>> >> > >> > >>> >> >>> Thanks >> > >> > >>> >> >>> >> > >> > >>> >> >>> >> > >> > >>> >> >>> On Wed, Aug 24, 2016 at 8:48 PM, Ian Dunlop < >> > >> > [email protected]> >> > >> > >>> >> >>> wrote: >> > >> > >>> >> >>> >> > >> > >>> >> >>> Hello, >> > >> > >>> >> >>>> >> > >> > >>> >> >>>> This is where the upload code is in the current mobile >> > code >> > >> > >>> >> >>>> https://github.com/apache/ >> incubator-taverna-mobile/blob/ >> > >> > >>> >> >>>> 4daa91d3f42b5a4474303fd39c7a7e >> > c1483cebff/app/src/main/java/ >> > >> > >>> >> >>>> org/apache/taverna/mobile/fragments/workflowdetails/ >> > >> > >>> >> >>>> WorkflowdetailFragment.java#L655 >> > >> > >>> >> >>>> >> > >> > >>> >> >>>> Cheers, >> > >> > >>> >> >>>> >> > >> > >>> >> >>>> Ian >> > >> > >>> >> >>>> >> > >> > >>> >> >>>> On 24 August 2016 at 14:40, Ian Dunlop < >> > [email protected] >> > >> > >> > >> > >>> wrote: >> > >> > >>> >> >>>> >> > >> > >>> >> >>>> Hello, >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>>> That upload code should already be available in the >> > mobile >> > >> > app. >> > >> > >>> >> Larry, >> > >> > >>> >> >>>>> myself and Finn spent a few hours figuring all that >> stuff >> > >> out >> > >> > >>> last >> > >> > >>> >> time >> > >> > >>> >> >>>>> round. >> > >> > >>> >> >>>>> I have added an API call in the taverna-player-portal >> to >> > get >> > >> > the >> > >> > >>> runs >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>> for >> > >> > >>> >> >>> >> > >> > >>> >> >>>> a user eg /users/1/runs. Pull request waiting in github >> > (hint >> > >> > hint >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>> Finn). I >> > >> > >>> >> >>>> >> > >> > >>> >> >>>>> even added some tests. >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>>> Cheers, >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>>> Ian >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>>> On 24 August 2016 at 10:57, Finn Bacall < >> > >> > >>> >> [email protected]> >> > >> > >>> >> >>>>> wrote: >> > >> > >>> >> >>>>> >> > >> > >>> >> >>>>> On 23/08/2016 11:38, Sagar wrote: >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>>> Hi, >> > >> > >>> >> >>>>>>> >> > >> > >>> >> >>>>>>> I think there is some problem as mention below >> > >> > >>> >> >>>>>>> >> > >> > >>> >> >>>>>>> 1) How can I upload a workflow using API ? >> > >> > >>> >> >>>>>>> >> > >> > >>> >> >>>>>>> here's a gist of some Java code someone wrote to >> > upload a >> > >> > >>> workflow >> > >> > >>> >> to >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>> the >> > >> > >>> >> >>>> >> > >> > >>> >> >>>>> portal: >> > >> > >>> >> >>>>>> https://gist.github.com/larrytech7/ >> 957cc61a3bdd82e3e030 >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>>> Basically the format is: >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>>> { "workflow" : { "document" : >> > "data:application/octet- >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>> stream;base64,<<<Insert >> > >> > >>> >> >>>> >> > >> > >>> >> >>>>> base64 encoded workflow here>>>" } } >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>>> Finn >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>>> >> > >> > >>> >> >>>>> >> > >> > >>> >> >>> >> > >> > >>> >> >>> -- >> > >> > >>> >> >>> >> > >> > >>> >> >>> *With warm regards * >> > >> > >>> >> >>> *Sincerely yours* >> > >> > >>> >> >>> Sagar >> > >> > >>> >> >>> >> > >> > >>> >> >>> >> > >> > >>> >> >>> *Student ,(7th Semester )B.Tech IT and mathematical >> > >> innovation* >> > >> > >>> >> >>> *Cluster Innovation Centre* >> > >> > >>> >> >>> *University of Delhi * >> > >> > >>> >> >>> >> > >> > >>> >> >>> >> > >> > >>> >> > >> > >> > >>> >> >> > >> > >>> >> >> > >> > >>> >> -- >> > >> > >>> >> >> > >> > >>> >> *With warm regards * >> > >> > >>> >> *Sincerely yours* >> > >> > >>> >> Sagar >> > >> > >>> >> >> > >> > >>> >> >> > >> > >>> >> *Student ,(7th Semester )B.Tech IT and mathematical >> innovation* >> > >> > >>> >> *Cluster Innovation Centre* >> > >> > >>> >> *University of Delhi * >> > >> > >>> >> >> > >> > >>> >> > >> > >>> >> > >> > >>> >> > >> > >>> -- >> > >> > >>> Stian Soiland-Reyes >> > >> > >>> Apache Taverna (incubating), Apache Commons >> > >> > >>> http://orcid.org/0000-0001-9842-9718 >> > >> > >>> >> > >> > >> >> > >> > >> >> > >> > >> >> > >> > >> -- >> > >> > >> >> > >> > >> *With warm regards * >> > >> > >> *Sincerely yours* >> > >> > >> Sagar >> > >> > >> >> > >> > >> >> > >> > >> *Student ,(7th Semester )B.Tech IT and mathematical innovation* >> > >> > >> *Cluster Innovation Centre* >> > >> > >> *University of Delhi * >> > >> > >> >> > >> > >> >> > >> > > >> > >> > > >> > >> > > -- >> > >> > > >> > >> > > *With warm regards * >> > >> > > *Sincerely yours* >> > >> > > Sagar >> > >> > > >> > >> > > >> > >> > > *Student ,(7th Semester )B.Tech IT and mathematical innovation* >> > >> > > *Cluster Innovation Centre* >> > >> > > *University of Delhi * >> > >> > >> > >> > >> > >> > >> > >> > -- >> > >> > Stian Soiland-Reyes >> > >> > http://orcid.org/0000-0001-9842-9718 >> > >> > >> > >> >> > >> > >> > >> > -- >> > Stian Soiland-Reyes >> > http://orcid.org/0000-0001-9842-9718 >> > >> >> >> >> -- >> >> *With warm regards * >> *Sincerely yours* >> Sagar >> >> >> *Student ,(7th Semester )B.Tech IT and mathematical innovation* >> *Cluster Innovation Centre* >> *University of Delhi * >> -- Stian Soiland-Reyes http://orcid.org/0000-0001-9842-9718
