Hi,

I have build taverna-scufl2-api as jar using java 7 .

Can you tell me how to use it to get all input and output MIME type and
their name?


On Mon, Sep 12, 2016 at 6:05 PM, Stian Soiland-Reyes <st...@apache.org>
wrote:

> Thanks - from this I would say Taverna Mobile can target KitKat (API
> level 19), get 80% share - which would rise by the time we release the
> app.
>
> But that still grounds us on Java 6 features - and even in latest
> Android SDK API the package java.nio.file is not there - so robundle
> would not work anyway.
>
> On 8 September 2016 at 19:24, Gale Naylor <ga...@noventussolutions.com>
> wrote:
> > Here is the distribution of Android API levels in use as of Aug 1:
> > https://developer.android.com/about/dashboards/index.html
> >
> > According to this, only 15% of all Android devices are running API 23.
> >
> >
> > On Thu, Sep 8, 2016 at 6:29 AM Ian Dunlop <ianwdun...@gmail.com> wrote:
> >
> >> Hello,
> >>
> >> That page is typically clear as mud! I think it is implying that jdk 7
> is
> >> fine for all API levels but for jdk 8 you need API 23 and (if special
> >> language features required) a different compiler. So as long as we don't
> >> use jdk 8 features we will be ok (maybe).  I guess that means
> >> taverna-language can be used (until we go all lambda crazy).
> >>
> >> Cheers,
> >>
> >> Ian
> >>
> >> On 8 September 2016 at 14:24, Stian Soiland-Reyes <st...@apache.org>
> >> wrote:
> >>
> >> > I don't think we use any Java 8 features in taverna-language (e.g.
> >> > Stream or lambdas) - but taverna-robundle use java.nio.Path from Java
> >> > 7.  I think it should be possible to make a subset of Taverna-language
> >> > you need compile for JAva 6 (e.g. taverna-scufl2-api,
> >> > taverna-scufl2-t2flow and taverna-scufl2-ucfpackage) - perhaps as a
> >> > Maven profile?
> >> >
> >> > https://developer.android.com/guide/platform/j8-jack.html says you
> can
> >> > use Java 7/8 features from API level 23-24.
> >> >
> >> > How do we decide which Android API level we want to support..?
> >> >
> >> > On 8 September 2016 at 10:56, Sagar <kumarsagar15...@gmail.com>
> wrote:
> >> > > Hi,
> >> > >
> >> > > I was reading the readme and I found Taverna-language-API will only
> >> work
> >> > > with JAVA 8 and newer.
> >> > > We can't use in taverna-mobile because Android API 16 works with
> JAVA
> >> 6.
> >> > >
> >> > > So, Now provide me with the schema of the .t2flow file.
> >> > >
> >> > > Thanks
> >> > >
> >> > > On Thu, Sep 8, 2016 at 2:13 PM, Sagar <kumarsagar15...@gmail.com>
> >> wrote:
> >> > >
> >> > >> Hi,
> >> > >>
> >> > >> How can I use the taverna-language API to know what will the inputs
> >> and
> >> > >> what will the outputs of workflow?
> >> > >>
> >> > >> I don't get any proper guide or code.
> >> > >>
> >> > >> Thanks
> >> > >>
> >> > >> On Fri, Sep 2, 2016 at 6:37 PM, Stian Soiland-Reyes <
> st...@apache.org
> >> >
> >> > >> wrote:
> >> > >>
> >> > >>> Yes, you should use taverna-language to load the .t2flow and
> inspect
> >> > it.
> >> > >>>
> >> > >>> You should not really need to make any Java beans for it as the
> >> > >>> workflow wouldn't be constructed on the phone (although you could
> do
> >> > >>> that with the Taverna Language API), but loaded from $somewhere as
> >> > >>> previously saved from the Taverna Workbench or downloaded from
> >> > >>> myExperiment - however you can use the API to inspect the
> workflow,
> >> > >>> e.g. list the input port names of the main workflow.
> >> > >>>
> >> > >>>
> >> > >>> See:
> >> > >>>
> >> > >>> https://taverna.incubator.apache.org/download/language/
> >> > >>>
> >> > >>> Javadoc:
> >> > >>> https://taverna.incubator.apache.org/javadoc/taverna-languag
> >> > >>> e/org/apache/taverna/scufl2/api/package-summary.html
> >> > >>>
> >> > >>> Example:
> >> > >>> https://github.com/apache/incubator-taverna-language/blob/
> >> > >>> master/taverna-scufl2-examples/src/main/java/org/apache/
> >> > >>> taverna/examples/ProcessorNames.java
> >> > >>>
> >> > >>> On 29 August 2016 at 14:39, Ian Dunlop <ianwdun...@gmail.com>
> wrote:
> >> > >>> > Hello,
> >> > >>> >
> >> > >>> > There is an xsd for t2flow available in the taverna-language
> module
> >> > >>> > https://github.com/apache/incubator-taverna-language/blob/
> >> > >>> master/taverna-scufl2-t2flow/src/main/resources/org/apache/
> >> > >>> taverna/scufl2/translator/t2flow/xsd/t2flow.xsd
> >> > >>> > You should be able to re-use taverna-language to parse t2flow
> >> rather
> >> > >>> than
> >> > >>> > build your own parser. Perhaps using
> >> > >>> > https://github.com/apache/incubator-taverna-language/tree/
> >> > >>> master/taverna-scufl2-t2flow.
> >> > >>> > No readme though. Maybe some other devs can advise how to use
> it.
> >> > >>> >
> >> > >>> > Cheers,
> >> > >>> >
> >> > >>> > Ian
> >> > >>> >
> >> > >>> > On 28 August 2016 at 18:23, Sagar <kumarsagar15...@gmail.com>
> >> wrote:
> >> > >>> >
> >> > >>> >> Hi,
> >> > >>> >>
> >> > >>> >> Is there any predefined tree structure for t2flow xml file ?
> >> > >>> >>
> >> > >>> >> if yes, then provide me so that I am able to create java beans
> for
> >> > it.
> >> > >>> >> otherwise, I will create it according to any t2flow xml file.
> >> > >>> >>
> >> > >>> >> Please revert ASAP.
> >> > >>> >>
> >> > >>> >> Thanks
> >> > >>> >>
> >> > >>> >> On Fri, Aug 26, 2016 at 3:54 PM, Finn Bacall <
> >> > >>> finn.bac...@manchester.ac.uk
> >> > >>> >> >
> >> > >>> >> wrote:
> >> > >>> >>
> >> > >>> >> > This wouldn't be that hard to implement, you can get the
> unique
> >> ID
> >> > >>> for
> >> > >>> >> the
> >> > >>> >> > workflow from the parser gem, see:
> >> > >>> >> >
> >> > >>> >> > https://github.com/myExperiment/workflow_parser-t2flow/blob/
> >> > >>> >> > master/lib/t2flow/model.rb#L136
> >> > >>> >> >
> >> > >>> >> > Then you'd just need to extract it in the parsing method:
> >> > >>> >> >
> >> > >>> >> > https://github.com/myGrid/taverna-player-portal/blob/master/
> >> > >>> >> > app/models/workflow.rb#L40
> >> > >>> >> >
> >> > >>> >> > and store it in a new field in the database.
> >> > >>> >> >
> >> > >>> >> > Cheers,
> >> > >>> >> >
> >> > >>> >> > Finn
> >> > >>> >> >
> >> > >>> >> >
> >> > >>> >> > On 26/08/2016 09:32, Ian Dunlop wrote:
> >> > >>> >> >
> >> > >>> >> >> Hello,
> >> > >>> >> >>
> >> > >>> >> >> I think you are pretty much spot on with your diagnosis. I
> >> agree
> >> > it
> >> > >>> is a
> >> > >>> >> >> bit of a pain that the workflow ids are different. However,
> >> each
> >> > >>> >> workflow
> >> > >>> >> >> does have a unique uuid internally (with t2flow anyway) so
> that
> >> > >>> could be
> >> > >>> >> >> used to check if a workflow on myexperiment and the portal
> are
> >> > the
> >> > >>> same.
> >> > >>> >> >> Look for the element <dataflow id="0f5e83c1-bbb5-42e7-9ba3-
> >> > >>> >> 438f645d3d17"
> >> > >>> >> >> role="top"> in a t2flow file. This probably means that the
> >> portal
> >> > >>> would
> >> > >>> >> >> need an extension to search by workflow uuid. For now I
> would
> >> > just
> >> > >>> treat
> >> > >>> >> >> each run as having a unique workflow and we can always
> improve
> >> it
> >> > >>> later.
> >> > >>> >> >>
> >> > >>> >> >> Cheers,
> >> > >>> >> >>
> >> > >>> >> >> Ian
> >> > >>> >> >>
> >> > >>> >> >> On 26 August 2016 at 08:02, Sagar <
> kumarsagar15...@gmail.com>
> >> > >>> wrote:
> >> > >>> >> >>
> >> > >>> >> >> Hello,
> >> > >>> >> >>>
> >> > >>> >> >>> Thank you for providing code. Now, I am working on it.
> >> > >>> >> >>>
> >> > >>> >> >>> Currently, I have understood that I need following steps to
> >> run
> >> > a
> >> > >>> >> >>> workflow
> >> > >>> >> >>> on taverna player portal
> >> > >>> >> >>>
> >> > >>> >> >>> 1) Download workflow content.
> >> > >>> >> >>> 2) Upload it to taverna player portal.
> >> > >>> >> >>> 3) Run it on taverna player portal.
> >> > >>> >> >>> 4) Show output of the complete workflow's run.
> >> > >>> >> >>>
> >> > >>> >> >>> I have also understood that there is no link between
> >> > myExperiment
> >> > >>> >> >>> workflow
> >> > >>> >> >>> and Taverna Player workflow that's why I can't retain
> >> > >>> myExperiment's
> >> > >>> >> >>> workflow running history on Taverna player portal and also
> I
> >> > can't
> >> > >>> >> search
> >> > >>> >> >>> the same workflow in taverna player portal. For each new
> run,
> >> I
> >> > >>> have to
> >> > >>> >> >>> upload it again.
> >> > >>> >> >>>
> >> > >>> >> >>>
> >> > >>> >> >>> If I have understood correct then Please revert back .
> >> > >>> >> >>>
> >> > >>> >> >>> If not then, Please correct me.
> >> > >>> >> >>>
> >> > >>> >> >>> Thanks
> >> > >>> >> >>>
> >> > >>> >> >>>
> >> > >>> >> >>> On Wed, Aug 24, 2016 at 8:48 PM, Ian Dunlop <
> >> > ianwdun...@gmail.com>
> >> > >>> >> >>> wrote:
> >> > >>> >> >>>
> >> > >>> >> >>> Hello,
> >> > >>> >> >>>>
> >> > >>> >> >>>> This is where the upload code is in the current mobile
> code
> >> > >>> >> >>>> https://github.com/apache/incubator-taverna-mobile/blob/
> >> > >>> >> >>>> 4daa91d3f42b5a4474303fd39c7a7e
> c1483cebff/app/src/main/java/
> >> > >>> >> >>>> org/apache/taverna/mobile/fragments/workflowdetails/
> >> > >>> >> >>>> WorkflowdetailFragment.java#L655
> >> > >>> >> >>>>
> >> > >>> >> >>>> Cheers,
> >> > >>> >> >>>>
> >> > >>> >> >>>> Ian
> >> > >>> >> >>>>
> >> > >>> >> >>>> On 24 August 2016 at 14:40, Ian Dunlop <
> ianwdun...@gmail.com
> >> >
> >> > >>> wrote:
> >> > >>> >> >>>>
> >> > >>> >> >>>> Hello,
> >> > >>> >> >>>>>
> >> > >>> >> >>>>> That upload code should already be available in the
> mobile
> >> > app.
> >> > >>> >> Larry,
> >> > >>> >> >>>>> myself and Finn spent a few hours figuring all that stuff
> >> out
> >> > >>> last
> >> > >>> >> time
> >> > >>> >> >>>>> round.
> >> > >>> >> >>>>> I have added an API call in the taverna-player-portal to
> get
> >> > the
> >> > >>> runs
> >> > >>> >> >>>>>
> >> > >>> >> >>>> for
> >> > >>> >> >>>
> >> > >>> >> >>>> a user eg /users/1/runs. Pull request waiting in github
> (hint
> >> > hint
> >> > >>> >> >>>>>
> >> > >>> >> >>>> Finn). I
> >> > >>> >> >>>>
> >> > >>> >> >>>>> even added some tests.
> >> > >>> >> >>>>>
> >> > >>> >> >>>>> Cheers,
> >> > >>> >> >>>>>
> >> > >>> >> >>>>> Ian
> >> > >>> >> >>>>>
> >> > >>> >> >>>>> On 24 August 2016 at 10:57, Finn Bacall <
> >> > >>> >> finn.bac...@manchester.ac.uk>
> >> > >>> >> >>>>> wrote:
> >> > >>> >> >>>>>
> >> > >>> >> >>>>> On 23/08/2016 11:38, Sagar wrote:
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>>> Hi,
> >> > >>> >> >>>>>>>
> >> > >>> >> >>>>>>> I think there is some problem as mention below
> >> > >>> >> >>>>>>>
> >> > >>> >> >>>>>>> 1) How can I upload a workflow using API ?
> >> > >>> >> >>>>>>>
> >> > >>> >> >>>>>>> here's a gist of some Java code someone wrote to
> upload a
> >> > >>> workflow
> >> > >>> >> to
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>> the
> >> > >>> >> >>>>
> >> > >>> >> >>>>> portal:
> >> > >>> >> >>>>>> https://gist.github.com/larrytech7/957cc61a3bdd82e3e030
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>>> Basically the format is:
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>>>      { "workflow" : { "document" :
> "data:application/octet-
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>> stream;base64,<<<Insert
> >> > >>> >> >>>>
> >> > >>> >> >>>>> base64 encoded workflow here>>>" } }
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>>> Finn
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>>>
> >> > >>> >> >>>>>
> >> > >>> >> >>>
> >> > >>> >> >>> --
> >> > >>> >> >>>
> >> > >>> >> >>> *With warm regards  *
> >> > >>> >> >>> *Sincerely yours*
> >> > >>> >> >>> Sagar
> >> > >>> >> >>>
> >> > >>> >> >>>
> >> > >>> >> >>> *Student ,(7th Semester )B.Tech IT and mathematical
> >> innovation*
> >> > >>> >> >>> *Cluster Innovation Centre*
> >> > >>> >> >>> *University of Delhi *
> >> > >>> >> >>>
> >> > >>> >> >>>
> >> > >>> >> >
> >> > >>> >>
> >> > >>> >>
> >> > >>> >> --
> >> > >>> >>
> >> > >>> >> *With warm regards  *
> >> > >>> >> *Sincerely yours*
> >> > >>> >> Sagar
> >> > >>> >>
> >> > >>> >>
> >> > >>> >> *Student ,(7th Semester )B.Tech IT and mathematical innovation*
> >> > >>> >> *Cluster Innovation Centre*
> >> > >>> >> *University of Delhi *
> >> > >>> >>
> >> > >>>
> >> > >>>
> >> > >>>
> >> > >>> --
> >> > >>> Stian Soiland-Reyes
> >> > >>> Apache Taverna (incubating), Apache Commons
> >> > >>> http://orcid.org/0000-0001-9842-9718
> >> > >>>
> >> > >>
> >> > >>
> >> > >>
> >> > >> --
> >> > >>
> >> > >> *With warm regards  *
> >> > >> *Sincerely yours*
> >> > >> Sagar
> >> > >>
> >> > >>
> >> > >> *Student ,(7th Semester )B.Tech IT and mathematical innovation*
> >> > >> *Cluster Innovation Centre*
> >> > >> *University of Delhi *
> >> > >>
> >> > >>
> >> > >
> >> > >
> >> > > --
> >> > >
> >> > > *With warm regards  *
> >> > > *Sincerely yours*
> >> > > Sagar
> >> > >
> >> > >
> >> > > *Student ,(7th Semester )B.Tech IT and mathematical innovation*
> >> > > *Cluster Innovation Centre*
> >> > > *University of Delhi *
> >> >
> >> >
> >> >
> >> > --
> >> > Stian Soiland-Reyes
> >> > http://orcid.org/0000-0001-9842-9718
> >> >
> >>
>
>
>
> --
> Stian Soiland-Reyes
> http://orcid.org/0000-0001-9842-9718
>



-- 

*With warm regards  *
*Sincerely yours*
Sagar


*Student ,(7th Semester )B.Tech IT and mathematical innovation*
*Cluster Innovation Centre*
*University of Delhi *

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