gadzooks m'lud. They're only serving up corrupt jar files! There's a link in
the comments at the bottom of the wiki that states this! The other link the
commenter provides works. Presumably they'll update either the jars or the
documentation...
Alistair
--
mov eax,1
mov ebx,0
int 80h
On 23 Jan 2012, at 12:16, Alistair Young wrote:
> thanks Michael but the presence of the drupal filter does seem to take Fedora
> down. If Fedora messaging is enabled it also runs out of memory. Without
> messaging fedora tries to restart when it detects the filter and then crashes:
>
> **************************
> ** FEDORA STARTUP ERROR **
> **************************
>
> Fedora startup failed
> org.fcrepo.server.errors.ServerInitializationException:
> java.lang.RuntimeException: org.fcrepo.server.Server.<init>(Server.java:673)
> org.fcrepo.server.BasicServer.<init>(BasicServer.java:41)
> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> org.fcrepo.server.Server.getInstance(Server.java:1001)
> org.fcrepo.server.ServerController.init(ServerController.java:402)
> javax.servlet.GenericServlet.init(GenericServlet.java:212)
> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206)
> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026)
> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421)
> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734)
> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461)
> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426)
> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361)
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653)
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642)
> java.lang.Thread.run(Thread.java:662)
>
> at org.fcrepo.server.Server.getInstance(Server.java:1044)
> at org.fcrepo.server.ServerController.init(ServerController.java:402)
> at javax.servlet.GenericServlet.init(GenericServlet.java:212)
> at
> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206)
> at
> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026)
> at
> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421)
> at
> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734)
> at
> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461)
> at
> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426)
> at
> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361)
> at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653)
> at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642)
> at java.lang.Thread.run(Thread.java:662)
>
> 23-Jan-2012 12:14:27 org.apache.catalina.loader.WebappClassLoader modified
> INFO: Additional JARs have been added :
> 'fcrepo-drupalauthfilter-3.4.2.jar'
> 23-Jan-2012 12:14:27 org.apache.catalina.core.StandardContext reload
> INFO: Reloading Context with name [/fedora] has started
> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> SEVERE: The web application [/fedora] appears to have started a thread named
> [MySQL Statement Cancellation Timer] but has failed to stop it. This is very
> likely to create a memory leak.
> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> SEVERE: The web application [/fedora] appears to have started a thread named
> [JotmBatch] but has failed to stop it. This is very likely to create a memory
> leak.
> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> SEVERE: The web application [/fedora] appears to have started a thread named
> [JotmClock] but has failed to stop it. This is very likely to create a memory
> leak.
> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> SEVERE: The web application [/fedora] appears to have started a thread named
> [Write-lock Reaper] but has failed to stop it. This is very likely to create
> a memory leak.
> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
> SEVERE: The web application [/fedora] created a ThreadLocal with key of type
> [ch.qos.logback.core.UnsynchronizedAppenderBase$1] (value
> [ch.qos.logback.core.UnsynchronizedAppenderBase$1@1d6733c]) and a value of
> type [java.lang.Boolean] (value [false]) but failed to remove it when the web
> application was stopped. This is very likely to create a memory leak.
> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
> SEVERE: The web application [/fedora] created a ThreadLocal with key of type
> [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] (value
> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@27a180]) and a
> value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value
> [org.apache.xerces.jaxp.DocumentBuilderImpl@1dc0fec]) but failed to remove it
> when the web application was stopped. This is very likely to create a memory
> leak.
>
>
>
> --
> mov eax,1
> mov ebx,0
> int 80h
>
>
>
>
> On 23 Jan 2012, at 12:02, Michael Della Bitta wrote:
>
>> Hello, Alistair,
>>
>> A number of those memory leak errors will happen as a matter of
>> course... I see them in our install. They may be a red herring... Have
>> you tried adding " -XX:+HeapDumpOnOutOfMemoryError" to your JVM args?
>> That will dump a file when the process runs out of RAM that shows what
>> was tying things up.
>>
>> Michael Della Bitta
>>
>> Senior Applications Developer
>> Information Technology Group
>> The New York Public Library
>> 40 West 20th Street, 5th Floor
>> New York, NY 10011-4211
>> (212) 621-0609
>>
>>
>>
>> On Mon, Jan 23, 2012 at 6:51 AM, Alistair Young
>> <alistair.yo...@uhi.ac.uk> wrote:
>>> I switched to Fedora 3.4.2 and removed gsearch and narrowed it down to:
>>>
>>> fcrepo-drupalauthfilter-3.4.2.jar
>>>
>>> Has anyone come across this before?
>>>
>>> 23-Jan-2012 11:49:06 org.apache.catalina.loader.WebappClassLoader modified
>>> INFO: Additional JARs have been added :
>>> 'fcrepo-drupalauthfilter-3.4.2.jar'
>>> 23-Jan-2012 11:49:06 org.apache.catalina.core.StandardContext reload
>>> INFO: Reloading Context with name [/fedora] has started
>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
>>> clearReferencesThreads
>>> SEVERE: The web application [/fedora] appears to have started a thread
>>> named [MySQL Statement Cancellation Timer] but has failed to stop it. This
>>> is very likely to create a memory leak.
>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
>>> clearThreadLocalMap
>>> SEVERE: The web application [/fedora] created a ThreadLocal with key of
>>> type [ch.qos.logback.core.UnsynchronizedAppenderBase$1] (value
>>> [ch.qos.logback.core.UnsynchronizedAppenderBase$1@f180d9]) and a value of
>>> type [java.lang.Boolean] (value [false]) but failed to remove it when the
>>> web application was stopped. This is very likely to create a memory leak.
>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
>>> clearThreadLocalMap
>>> SEVERE: The web application [/fedora] created a ThreadLocal with key of
>>> type [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] (value
>>> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@1426497]) and a
>>> value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value
>>> [org.apache.xerces.jaxp.DocumentBuilderImpl@1da11d8]) but failed to remove
>>> it when the web application was stopped. This is very likely to create a
>>> memory leak.
>>>
>>>
>>> thanks,
>>>
>>> Alistair
>>>
>>> --
>>> mov eax,1
>>> mov ebx,0
>>> int 80h
>>>
>>>
>>>
>>>
>>> On 23 Jan 2012, at 10:45, Alistair Young wrote:
>>>
>>>> Would anyone know why this is the case? The log fills with this error on
>>>> every startup and within 30s tomcat runs out of memory. I'm running fedora
>>>> 3.5 with a drupal filter for allowing drupal admins to get at it. Also
>>>> running gsearch 2.4.
>>>>
>>>> SEVERE: The web application [/fedora] created a ThreadLocal with key of
>>>> type [org.slf4j.impl.CopyOnInheritThreadLocal] (value
>>>> [org.slf4j.impl.CopyOnInheritThreadLocal@1e8b327]) and a value of type
>>>> [java.util.HashMap] (value [{activemq.broker=localhost}]) but failed to
>>>> remove it when the web application was stopped. This is very likely to
>>>> create a memory leak.
>>>>
>>>> thanks,
>>>>
>>>> Alistair
>>>>
>>>>
>>>> --
>>>> mov eax,1
>>>> mov ebx,0
>>>> int 80h
>>>>
>>>>
>>>>
>>>>
>>>>
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