Glad you figured it out despite my help. :)
On Jan 23, 2012 9:16 AM, "Alistair Young" <alistair.yo...@uhi.ac.uk> wrote:
> gadzooks m'lud. They're only serving up corrupt jar files! There's a link
> in the comments at the bottom of the wiki that states this! The other link
> the commenter provides works. Presumably they'll update either the jars or
> the documentation...
>
> Alistair
>
> --
> mov eax,1
> mov ebx,0
> int 80h
>
>
>
>
> On 23 Jan 2012, at 12:16, Alistair Young wrote:
>
> > thanks Michael but the presence of the drupal filter does seem to take
> Fedora down. If Fedora messaging is enabled it also runs out of memory.
> Without messaging fedora tries to restart when it detects the filter and
> then crashes:
> >
> > **************************
> > ** FEDORA STARTUP ERROR **
> > **************************
> >
> > Fedora startup failed
> > org.fcrepo.server.errors.ServerInitializationException:
> java.lang.RuntimeException: org.fcrepo.server.Server.<init>(Server.java:673)
> > org.fcrepo.server.BasicServer.<init>(BasicServer.java:41)
> > sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
> >
> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
> >
> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
> > java.lang.reflect.Constructor.newInstance(Constructor.java:513)
> > org.fcrepo.server.Server.getInstance(Server.java:1001)
> > org.fcrepo.server.ServerController.init(ServerController.java:402)
> > javax.servlet.GenericServlet.init(GenericServlet.java:212)
> >
> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206)
> > org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026)
> >
> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421)
> > org.apache.catalina.core.StandardContext.start(StandardContext.java:4734)
> >
> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461)
> >
> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426)
> >
> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361)
> >
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653)
> >
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> >
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> >
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642)
> > java.lang.Thread.run(Thread.java:662)
> >
> > at org.fcrepo.server.Server.getInstance(Server.java:1044)
> > at
> org.fcrepo.server.ServerController.init(ServerController.java:402)
> > at javax.servlet.GenericServlet.init(GenericServlet.java:212)
> > at
> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206)
> > at
> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026)
> > at
> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421)
> > at
> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734)
> > at
> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461)
> > at
> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426)
> > at
> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361)
> > at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653)
> > at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> > at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
> > at
> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642)
> > at java.lang.Thread.run(Thread.java:662)
> >
> > 23-Jan-2012 12:14:27 org.apache.catalina.loader.WebappClassLoader
> modified
> > INFO: Additional JARs have been added :
> 'fcrepo-drupalauthfilter-3.4.2.jar'
> > 23-Jan-2012 12:14:27 org.apache.catalina.core.StandardContext reload
> > INFO: Reloading Context with name [/fedora] has started
> > 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> > SEVERE: The web application [/fedora] appears to have started a thread
> named [MySQL Statement Cancellation Timer] but has failed to stop it. This
> is very likely to create a memory leak.
> > 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> > SEVERE: The web application [/fedora] appears to have started a thread
> named [JotmBatch] but has failed to stop it. This is very likely to create
> a memory leak.
> > 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> > SEVERE: The web application [/fedora] appears to have started a thread
> named [JotmClock] but has failed to stop it. This is very likely to create
> a memory leak.
> > 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> > SEVERE: The web application [/fedora] appears to have started a thread
> named [Write-lock Reaper] but has failed to stop it. This is very likely to
> create a memory leak.
> > 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
> > SEVERE: The web application [/fedora] created a ThreadLocal with key of
> type [ch.qos.logback.core.UnsynchronizedAppenderBase$1] (value
> [ch.qos.logback.core.UnsynchronizedAppenderBase$1@1d6733c]) and a value
> of type [java.lang.Boolean] (value [false]) but failed to remove it when
> the web application was stopped. This is very likely to create a memory
> leak.
> > 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
> > SEVERE: The web application [/fedora] created a ThreadLocal with key of
> type [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] (value
> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@27a180]) and a
> value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value
> [org.apache.xerces.jaxp.DocumentBuilderImpl@1dc0fec]) but failed to
> remove it when the web application was stopped. This is very likely to
> create a memory leak.
> >
> >
> >
> > --
> > mov eax,1
> > mov ebx,0
> > int 80h
> >
> >
> >
> >
> > On 23 Jan 2012, at 12:02, Michael Della Bitta wrote:
> >
> >> Hello, Alistair,
> >>
> >> A number of those memory leak errors will happen as a matter of
> >> course... I see them in our install. They may be a red herring... Have
> >> you tried adding " -XX:+HeapDumpOnOutOfMemoryError" to your JVM args?
> >> That will dump a file when the process runs out of RAM that shows what
> >> was tying things up.
> >>
> >> Michael Della Bitta
> >>
> >> Senior Applications Developer
> >> Information Technology Group
> >> The New York Public Library
> >> 40 West 20th Street, 5th Floor
> >> New York, NY 10011-4211
> >> (212) 621-0609
> >>
> >>
> >>
> >> On Mon, Jan 23, 2012 at 6:51 AM, Alistair Young
> >> <alistair.yo...@uhi.ac.uk> wrote:
> >>> I switched to Fedora 3.4.2 and removed gsearch and narrowed it down to:
> >>>
> >>> fcrepo-drupalauthfilter-3.4.2.jar
> >>>
> >>> Has anyone come across this before?
> >>>
> >>> 23-Jan-2012 11:49:06 org.apache.catalina.loader.WebappClassLoader
> modified
> >>> INFO: Additional JARs have been added :
> 'fcrepo-drupalauthfilter-3.4.2.jar'
> >>> 23-Jan-2012 11:49:06 org.apache.catalina.core.StandardContext reload
> >>> INFO: Reloading Context with name [/fedora] has started
> >>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
> clearReferencesThreads
> >>> SEVERE: The web application [/fedora] appears to have started a thread
> named [MySQL Statement Cancellation Timer] but has failed to stop it. This
> is very likely to create a memory leak.
> >>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
> >>> SEVERE: The web application [/fedora] created a ThreadLocal with key
> of type [ch.qos.logback.core.UnsynchronizedAppenderBase$1] (value
> [ch.qos.logback.core.UnsynchronizedAppenderBase$1@f180d9]) and a value of
> type [java.lang.Boolean] (value [false]) but failed to remove it when the
> web application was stopped. This is very likely to create a memory leak.
> >>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
> clearThreadLocalMap
> >>> SEVERE: The web application [/fedora] created a ThreadLocal with key
> of type [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] (value
> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@1426497]) and
> a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value
> [org.apache.xerces.jaxp.DocumentBuilderImpl@1da11d8]) but failed to
> remove it when the web application was stopped. This is very likely to
> create a memory leak.
> >>>
> >>>
> >>> thanks,
> >>>
> >>> Alistair
> >>>
> >>> --
> >>> mov eax,1
> >>> mov ebx,0
> >>> int 80h
> >>>
> >>>
> >>>
> >>>
> >>> On 23 Jan 2012, at 10:45, Alistair Young wrote:
> >>>
> >>>> Would anyone know why this is the case? The log fills with this error
> on every startup and within 30s tomcat runs out of memory. I'm running
> fedora 3.5 with a drupal filter for allowing drupal admins to get at it.
> Also running gsearch 2.4.
> >>>>
> >>>> SEVERE: The web application [/fedora] created a ThreadLocal with key
> of type [org.slf4j.impl.CopyOnInheritThreadLocal] (value
> [org.slf4j.impl.CopyOnInheritThreadLocal@1e8b327]) and a value of type
> [java.util.HashMap] (value [{activemq.broker=localhost}]) but failed to
> remove it when the web application was stopped. This is very likely to
> create a memory leak.
> >>>>
> >>>> thanks,
> >>>>
> >>>> Alistair
> >>>>
> >>>>
> >>>> --
> >>>> mov eax,1
> >>>> mov ebx,0
> >>>> int 80h
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
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