Alistair,
Who is "They" in "They're only serving up corrupt..."? Could you
provide a link to the wiki you mention?
Thanks,
Maury Bouchard
Simmons College - GSLIS
Quoting Alistair Young <alistair.yo...@uhi.ac.uk>:
> gadzooks m'lud. They're only serving up corrupt jar files! There's a
> link in the comments at the bottom of the wiki that states this! The
> other link the commenter provides works. Presumably they'll update
> either the jars or the documentation...
>
> Alistair
>
> --
> mov eax,1
> mov ebx,0
> int 80h
>
>
>
>
> On 23 Jan 2012, at 12:16, Alistair Young wrote:
>
>> thanks Michael but the presence of the drupal filter does seem to
>> take Fedora down. If Fedora messaging is enabled it also runs out
>> of memory. Without messaging fedora tries to restart when it
>> detects the filter and then crashes:
>>
>> **************************
>> ** FEDORA STARTUP ERROR **
>> **************************
>>
>> Fedora startup failed
>> org.fcrepo.server.errors.ServerInitializationException:
>> java.lang.RuntimeException:
>> org.fcrepo.server.Server.<init>(Server.java:673)
>> org.fcrepo.server.BasicServer.<init>(BasicServer.java:41)
>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
>> java.lang.reflect.Constructor.newInstance(Constructor.java:513)
>> org.fcrepo.server.Server.getInstance(Server.java:1001)
>> org.fcrepo.server.ServerController.init(ServerController.java:402)
>> javax.servlet.GenericServlet.init(GenericServlet.java:212)
>> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206)
>> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026)
>> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421)
>> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734)
>> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461)
>> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426)
>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361)
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653)
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642)
>> java.lang.Thread.run(Thread.java:662)
>>
>> at org.fcrepo.server.Server.getInstance(Server.java:1044)
>> at org.fcrepo.server.ServerController.init(ServerController.java:402)
>> at javax.servlet.GenericServlet.init(GenericServlet.java:212)
>> at
>> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206)
>> at
>> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026)
>> at
>> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421)
>> at
>> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734)
>> at
>> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461)
>> at
>> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426)
>> at
>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361)
>> at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653)
>> at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
>> at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662)
>> at
>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642)
>> at java.lang.Thread.run(Thread.java:662)
>>
>> 23-Jan-2012 12:14:27 org.apache.catalina.loader.WebappClassLoader modified
>> INFO: Additional JARs have been added :
>> 'fcrepo-drupalauthfilter-3.4.2.jar'
>> 23-Jan-2012 12:14:27 org.apache.catalina.core.StandardContext reload
>> INFO: Reloading Context with name [/fedora] has started
>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
>> clearReferencesThreads
>> SEVERE: The web application [/fedora] appears to have started a
>> thread named [MySQL Statement Cancellation Timer] but has failed to
>> stop it. This is very likely to create a memory leak.
>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
>> clearReferencesThreads
>> SEVERE: The web application [/fedora] appears to have started a
>> thread named [JotmBatch] but has failed to stop it. This is very
>> likely to create a memory leak.
>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
>> clearReferencesThreads
>> SEVERE: The web application [/fedora] appears to have started a
>> thread named [JotmClock] but has failed to stop it. This is very
>> likely to create a memory leak.
>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
>> clearReferencesThreads
>> SEVERE: The web application [/fedora] appears to have started a
>> thread named [Write-lock Reaper] but has failed to stop it. This is
>> very likely to create a memory leak.
>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>> SEVERE: The web application [/fedora] created a ThreadLocal with
>> key of type [ch.qos.logback.core.UnsynchronizedAppenderBase$1]
>> (value [ch.qos.logback.core.UnsynchronizedAppenderBase$1@1d6733c])
>> and a value of type [java.lang.Boolean] (value [false]) but failed
>> to remove it when the web application was stopped. This is very
>> likely to create a memory leak.
>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader
>> clearThreadLocalMap
>> SEVERE: The web application [/fedora] created a ThreadLocal with
>> key of type
>> [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] (value
>> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@27a180])
>> and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl]
>> (value [org.apache.xerces.jaxp.DocumentBuilderImpl@1dc0fec]) but
>> failed to remove it when the web application was stopped. This is
>> very likely to create a memory leak.
>>
>>
>>
>> --
>> mov eax,1
>> mov ebx,0
>> int 80h
>>
>>
>>
>>
>> On 23 Jan 2012, at 12:02, Michael Della Bitta wrote:
>>
>>> Hello, Alistair,
>>>
>>> A number of those memory leak errors will happen as a matter of
>>> course... I see them in our install. They may be a red herring... Have
>>> you tried adding " -XX:+HeapDumpOnOutOfMemoryError" to your JVM args?
>>> That will dump a file when the process runs out of RAM that shows what
>>> was tying things up.
>>>
>>> Michael Della Bitta
>>>
>>> Senior Applications Developer
>>> Information Technology Group
>>> The New York Public Library
>>> 40 West 20th Street, 5th Floor
>>> New York, NY 10011-4211
>>> (212) 621-0609
>>>
>>>
>>>
>>> On Mon, Jan 23, 2012 at 6:51 AM, Alistair Young
>>> <alistair.yo...@uhi.ac.uk> wrote:
>>>> I switched to Fedora 3.4.2 and removed gsearch and narrowed it down to:
>>>>
>>>> fcrepo-drupalauthfilter-3.4.2.jar
>>>>
>>>> Has anyone come across this before?
>>>>
>>>> 23-Jan-2012 11:49:06 org.apache.catalina.loader.WebappClassLoader modified
>>>> INFO: Additional JARs have been added :
>>>> 'fcrepo-drupalauthfilter-3.4.2.jar'
>>>> 23-Jan-2012 11:49:06 org.apache.catalina.core.StandardContext reload
>>>> INFO: Reloading Context with name [/fedora] has started
>>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
>>>> clearReferencesThreads
>>>> SEVERE: The web application [/fedora] appears to have started a
>>>> thread named [MySQL Statement Cancellation Timer] but has failed
>>>> to stop it. This is very likely to create a memory leak.
>>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
>>>> clearThreadLocalMap
>>>> SEVERE: The web application [/fedora] created a ThreadLocal with
>>>> key of type [ch.qos.logback.core.UnsynchronizedAppenderBase$1]
>>>> (value [ch.qos.logback.core.UnsynchronizedAppenderBase$1@f180d9])
>>>> and a value of type [java.lang.Boolean] (value [false]) but
>>>> failed to remove it when the web application was stopped. This is
>>>> very likely to create a memory leak.
>>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader
>>>> clearThreadLocalMap
>>>> SEVERE: The web application [/fedora] created a ThreadLocal with
>>>> key of type
>>>> [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder]
>>>> (value
>>>> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@1426497]) and
>>>> a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl]
>>>> (value [org.apache.xerces.jaxp.DocumentBuilderImpl@1da11d8]) but
>>>> failed to remove it when the web application was stopped. This is
>>>> very likely to create a memory leak.
>>>>
>>>>
>>>> thanks,
>>>>
>>>> Alistair
>>>>
>>>> --
>>>> mov eax,1
>>>> mov ebx,0
>>>> int 80h
>>>>
>>>>
>>>>
>>>>
>>>> On 23 Jan 2012, at 10:45, Alistair Young wrote:
>>>>
>>>>> Would anyone know why this is the case? The log fills with this
>>>>> error on every startup and within 30s tomcat runs out of memory.
>>>>> I'm running fedora 3.5 with a drupal filter for allowing drupal
>>>>> admins to get at it. Also running gsearch 2.4.
>>>>>
>>>>> SEVERE: The web application [/fedora] created a ThreadLocal with
>>>>> key of type [org.slf4j.impl.CopyOnInheritThreadLocal] (value
>>>>> [org.slf4j.impl.CopyOnInheritThreadLocal@1e8b327]) and a value
>>>>> of type [java.util.HashMap] (value
>>>>> [{activemq.broker=localhost}]) but failed to remove it when the
>>>>> web application was stopped. This is very likely to create a
>>>>> memory leak.
>>>>>
>>>>> thanks,
>>>>>
>>>>> Alistair
>>>>>
>>>>>
>>>>> --
>>>>> mov eax,1
>>>>> mov ebx,0
>>>>> int 80h
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
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