thanks for that David. Must have got used to wget too much! Maurice, 'they' means the folk who host the documentation at:
https://wiki.duraspace.org/pages/viewpage.action?pageId=30217519 superb islandora documentation btw - it's not often you follow docs line by line and they work. cheers, Alistair -- mov eax,1 mov ebx,0 int 80h On 23 Jan 2012, at 14:37, maurice.bouch...@simmons.edu wrote: > Alistair, > Who is "They" in "They're only serving up corrupt..."? Could you > provide a link to the wiki you mention? > > Thanks, > Maury Bouchard > Simmons College - GSLIS > > Quoting Alistair Young <alistair.yo...@uhi.ac.uk>: > >> gadzooks m'lud. They're only serving up corrupt jar files! There's a >> link in the comments at the bottom of the wiki that states this! The >> other link the commenter provides works. Presumably they'll update >> either the jars or the documentation... >> >> Alistair >> >> -- >> mov eax,1 >> mov ebx,0 >> int 80h >> >> >> >> >> On 23 Jan 2012, at 12:16, Alistair Young wrote: >> >>> thanks Michael but the presence of the drupal filter does seem to >>> take Fedora down. If Fedora messaging is enabled it also runs out >>> of memory. Without messaging fedora tries to restart when it >>> detects the filter and then crashes: >>> >>> ************************** >>> ** FEDORA STARTUP ERROR ** >>> ************************** >>> >>> Fedora startup failed >>> org.fcrepo.server.errors.ServerInitializationException: >>> java.lang.RuntimeException: >>> org.fcrepo.server.Server.<init>(Server.java:673) >>> org.fcrepo.server.BasicServer.<init>(BasicServer.java:41) >>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) >>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) >>> java.lang.reflect.Constructor.newInstance(Constructor.java:513) >>> org.fcrepo.server.Server.getInstance(Server.java:1001) >>> org.fcrepo.server.ServerController.init(ServerController.java:402) >>> javax.servlet.GenericServlet.init(GenericServlet.java:212) >>> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206) >>> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026) >>> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421) >>> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734) >>> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461) >>> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426) >>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361) >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653) >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662) >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662) >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642) >>> java.lang.Thread.run(Thread.java:662) >>> >>> at org.fcrepo.server.Server.getInstance(Server.java:1044) >>> at org.fcrepo.server.ServerController.init(ServerController.java:402) >>> at javax.servlet.GenericServlet.init(GenericServlet.java:212) >>> at >>> org.apache.catalina.core.StandardWrapper.loadServlet(StandardWrapper.java:1206) >>> at >>> org.apache.catalina.core.StandardWrapper.load(StandardWrapper.java:1026) >>> at >>> org.apache.catalina.core.StandardContext.loadOnStartup(StandardContext.java:4421) >>> at >>> org.apache.catalina.core.StandardContext.start(StandardContext.java:4734) >>> at >>> org.apache.catalina.core.StandardContext.reload(StandardContext.java:3461) >>> at >>> org.apache.catalina.loader.WebappLoader.backgroundProcess(WebappLoader.java:426) >>> at >>> org.apache.catalina.core.ContainerBase.backgroundProcess(ContainerBase.java:1361) >>> at >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1653) >>> at >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662) >>> at >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.processChildren(ContainerBase.java:1662) >>> at >>> org.apache.catalina.core.ContainerBase$ContainerBackgroundProcessor.run(ContainerBase.java:1642) >>> at java.lang.Thread.run(Thread.java:662) >>> >>> 23-Jan-2012 12:14:27 org.apache.catalina.loader.WebappClassLoader modified >>> INFO: Additional JARs have been added : >>> 'fcrepo-drupalauthfilter-3.4.2.jar' >>> 23-Jan-2012 12:14:27 org.apache.catalina.core.StandardContext reload >>> INFO: Reloading Context with name [/fedora] has started >>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader >>> clearReferencesThreads >>> SEVERE: The web application [/fedora] appears to have started a >>> thread named [MySQL Statement Cancellation Timer] but has failed to >>> stop it. This is very likely to create a memory leak. >>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader >>> clearReferencesThreads >>> SEVERE: The web application [/fedora] appears to have started a >>> thread named [JotmBatch] but has failed to stop it. This is very >>> likely to create a memory leak. >>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader >>> clearReferencesThreads >>> SEVERE: The web application [/fedora] appears to have started a >>> thread named [JotmClock] but has failed to stop it. This is very >>> likely to create a memory leak. >>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader >>> clearReferencesThreads >>> SEVERE: The web application [/fedora] appears to have started a >>> thread named [Write-lock Reaper] but has failed to stop it. This is >>> very likely to create a memory leak. >>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader >>> clearThreadLocalMap >>> SEVERE: The web application [/fedora] created a ThreadLocal with >>> key of type [ch.qos.logback.core.UnsynchronizedAppenderBase$1] >>> (value [ch.qos.logback.core.UnsynchronizedAppenderBase$1@1d6733c]) >>> and a value of type [java.lang.Boolean] (value [false]) but failed >>> to remove it when the web application was stopped. This is very >>> likely to create a memory leak. >>> 23-Jan-2012 12:14:29 org.apache.catalina.loader.WebappClassLoader >>> clearThreadLocalMap >>> SEVERE: The web application [/fedora] created a ThreadLocal with >>> key of type >>> [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] (value >>> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@27a180]) >>> and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] >>> (value [org.apache.xerces.jaxp.DocumentBuilderImpl@1dc0fec]) but >>> failed to remove it when the web application was stopped. This is >>> very likely to create a memory leak. >>> >>> >>> >>> -- >>> mov eax,1 >>> mov ebx,0 >>> int 80h >>> >>> >>> >>> >>> On 23 Jan 2012, at 12:02, Michael Della Bitta wrote: >>> >>>> Hello, Alistair, >>>> >>>> A number of those memory leak errors will happen as a matter of >>>> course... I see them in our install. They may be a red herring... Have >>>> you tried adding " -XX:+HeapDumpOnOutOfMemoryError" to your JVM args? >>>> That will dump a file when the process runs out of RAM that shows what >>>> was tying things up. >>>> >>>> Michael Della Bitta >>>> >>>> Senior Applications Developer >>>> Information Technology Group >>>> The New York Public Library >>>> 40 West 20th Street, 5th Floor >>>> New York, NY 10011-4211 >>>> (212) 621-0609 >>>> >>>> >>>> >>>> On Mon, Jan 23, 2012 at 6:51 AM, Alistair Young >>>> <alistair.yo...@uhi.ac.uk> wrote: >>>>> I switched to Fedora 3.4.2 and removed gsearch and narrowed it down to: >>>>> >>>>> fcrepo-drupalauthfilter-3.4.2.jar >>>>> >>>>> Has anyone come across this before? >>>>> >>>>> 23-Jan-2012 11:49:06 org.apache.catalina.loader.WebappClassLoader modified >>>>> INFO: Additional JARs have been added : >>>>> 'fcrepo-drupalauthfilter-3.4.2.jar' >>>>> 23-Jan-2012 11:49:06 org.apache.catalina.core.StandardContext reload >>>>> INFO: Reloading Context with name [/fedora] has started >>>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader >>>>> clearReferencesThreads >>>>> SEVERE: The web application [/fedora] appears to have started a >>>>> thread named [MySQL Statement Cancellation Timer] but has failed >>>>> to stop it. This is very likely to create a memory leak. >>>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader >>>>> clearThreadLocalMap >>>>> SEVERE: The web application [/fedora] created a ThreadLocal with >>>>> key of type [ch.qos.logback.core.UnsynchronizedAppenderBase$1] >>>>> (value [ch.qos.logback.core.UnsynchronizedAppenderBase$1@f180d9]) >>>>> and a value of type [java.lang.Boolean] (value [false]) but >>>>> failed to remove it when the web application was stopped. This is >>>>> very likely to create a memory leak. >>>>> 23-Jan-2012 11:49:09 org.apache.catalina.loader.WebappClassLoader >>>>> clearThreadLocalMap >>>>> SEVERE: The web application [/fedora] created a ThreadLocal with >>>>> key of type >>>>> [org.apache.axis.utils.XMLUtils.ThreadLocalDocumentBuilder] >>>>> (value >>>>> [org.apache.axis.utils.XMLUtils$ThreadLocalDocumentBuilder@1426497]) and >>>>> a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] >>>>> (value [org.apache.xerces.jaxp.DocumentBuilderImpl@1da11d8]) but >>>>> failed to remove it when the web application was stopped. This is >>>>> very likely to create a memory leak. >>>>> >>>>> >>>>> thanks, >>>>> >>>>> Alistair >>>>> >>>>> -- >>>>> mov eax,1 >>>>> mov ebx,0 >>>>> int 80h >>>>> >>>>> >>>>> >>>>> >>>>> On 23 Jan 2012, at 10:45, Alistair Young wrote: >>>>> >>>>>> Would anyone know why this is the case? The log fills with this >>>>>> error on every startup and within 30s tomcat runs out of memory. >>>>>> I'm running fedora 3.5 with a drupal filter for allowing drupal >>>>>> admins to get at it. Also running gsearch 2.4. >>>>>> >>>>>> SEVERE: The web application [/fedora] created a ThreadLocal with >>>>>> key of type [org.slf4j.impl.CopyOnInheritThreadLocal] (value >>>>>> [org.slf4j.impl.CopyOnInheritThreadLocal@1e8b327]) and a value >>>>>> of type [java.util.HashMap] (value >>>>>> [{activemq.broker=localhost}]) but failed to remove it when the >>>>>> web application was stopped. This is very likely to create a >>>>>> memory leak. >>>>>> >>>>>> thanks, >>>>>> >>>>>> Alistair >>>>>> >>>>>> >>>>>> -- >>>>>> mov eax,1 >>>>>> mov ebx,0 >>>>>> int 80h >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> ------------------------------------------------------------------------------ >>>>>> Try before you buy = See our experts in action! >>>>>> The most comprehensive online learning library for Microsoft developers >>>>>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >>>>>> Metro Style Apps, more. 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Free future releases when you subscribe now! >>>>> http://p.sf.net/sfu/learndevnow-dev2 >>>>> _______________________________________________ >>>>> Fedora-commons-users mailing list >>>>> Fedora-commons-users@lists.sourceforge.net >>>>> https://lists.sourceforge.net/lists/listinfo/fedora-commons-users >>>> >>>> ------------------------------------------------------------------------------ >>>> Try before you buy = See our experts in action! >>>> The most comprehensive online learning library for Microsoft developers >>>> is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >>>> Metro Style Apps, more. 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Free future releases when you subscribe now! >> http://p.sf.net/sfu/learndevnow-dev2 >> _______________________________________________ >> Fedora-commons-users mailing list >> Fedora-commons-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/fedora-commons-users >> > > > > > > ------------------------------------------------------------------------------ > Try before you buy = See our experts in action! > The most comprehensive online learning library for Microsoft developers > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, > Metro Style Apps, more. Free future releases when you subscribe now! > http://p.sf.net/sfu/learndevnow-dev2 > _______________________________________________ > Fedora-commons-users mailing list > Fedora-commons-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/fedora-commons-users ------------------------------------------------------------------------------ Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2 _______________________________________________ Fedora-commons-users mailing list Fedora-commons-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/fedora-commons-users
