Hi Claudia, Make sure you use the filedrop to upload your data https://gate.nmr.mgh.harvard.edu/filedrop2/
Cheers, Shantanu On Mon, April 29, 2013 9:53 am, Claudia Dacquino wrote: > Hi Bruce, > I think wm.mgz it's accurate enough, but what you mean? > I'm trying to upload data, but I've problems with your server. > Cheers, > Claudia > > > 2013/4/29 Claudia Dacquino <claudia.dacqu...@gmail.com> > >> Hi Bruce, >> I think wm.mgz it's accurate enough, but what you mean? >> I'm trying to upload data, but I've problems with your server. >> Cheers, >> Claudia >> >> >> 2013/4/29 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> >>> Hi Claudia >>> >>> it really depends on the individual case and what's causing the >>> exclusion. Does the wm.mgz look accurate? If so, you may have a >>> topological >>> defect that is being fixed incorrectly. Usually we focus on fixing the >>> white boundary and that will also correct the pial. You can set the >>> expected gray matter intensities in the xopts file, but that is rarely >>> necessary and only if your gray matter looks very different than the >>> sequences we are used to. >>> >>> If you can't sort it out feel free to upload you data. >>> >>> cheers >>> Bruce >>> >>> >>> On Mon, 29 Apr 2013, Claudia Dacquino wrote: >>> >>> Hi Freesurfers,I have a question about pial editing. >>>> >>>> I have some reconructions in which there's a lot of grey matter >>>> excluded, >>>> and consequently white metter too. I did correct these images manually >>>> by >>>> control points editing, and then autorecon2-cp autorecon3, but some >>>> cortical >>>> grey matter continues to not be included in the pial surface, and I >>>> have >>>> white matter areas that are still not included in either the pial or >>>> white >>>> matter boundaries. >>>> Is there anyother ethods for adding grey matter in the pial surfeces >>>> other >>>> than editing control points (such as by editing voxels to add grey >>>> matter), >>>> or something like that? >>>> Thanks for your help. >>>> Claudia >>>> >>>> >>>> >>> >>> The information in this e-mail is intended only for the person to whom >>> it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/**complianceline<http://www.partners.org/complianceline>. >>> If the e-mail was sent to you in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Shantanu Ghosh, Ph.D. Harvard Medical School & Massachusetts General Hospital Martinos Center for Biomedical Imaging _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
