Hi Mailing List, Still trying to solve the below medial surface problem. Does anyone have any ideas? Kind regards, Bronwyn Overs Research Assistant
Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au <http://neura.edu.au/> <https://twitter.com/neuraustralia> <https://www.facebook.com/NeuroscienceResearchAustralia> <http://www.neura.edu.au/help-research/subscribe> > On 28 Mar 2017, at 10:51 pm, Yann Quidé <yannqu...@gmail.com> wrote: > > Dear all, > > I have an equivalent issue with my data. Any idea on how to fix this? > > Thanks. > > Yann > > >> Begin forwarded message: >> >> From: Bronwyn Overs <b.ov...@neura.edu.au <mailto:b.ov...@neura.edu.au>> >> Subject: Re: [Freesurfer] Medial Surface Problem >> Date: 20 March 2017 10:28:37 am AEDT >> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu >> <mailto:freesurfer@nmr.mgh.harvard.edu>> >> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu >> <mailto:freesurfer@nmr.mgh.harvard.edu>> >> >> Hello again mailing list, >> >> Can anyone address the possible cause of the medial surface problem shown >> below (overestimating of rh medial surface, shows up in the long image and >> not the tp or base images). Forgot to mention that I am using freesurfer >> v5.3 with an updated mris_make_surfaces binary (sourced from the development >> version at >> ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/centos6_x86_64/ >> >> <ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/centos6_x86_64/> >> ). >> >> Here is the image again: >> >> <unknown.png> >> Kind regards, >> Bronwyn Overs >> Research Assistant >> >> Neuroscience Research Australia >> Margarete Ainsworth Building >> Barker Street Randwick Sydney NSW 2031 Australia >> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >> >> neura.edu.au <http://neura.edu.au/> >> <https://twitter.com/neuraustralia> >> <https://www.facebook.com/NeuroscienceResearchAustralia> >> <http://www.neura.edu.au/help-research/subscribe> >>> On 6 Mar 2017, at 1:17 pm, Bronwyn Overs <b.ov...@neura.edu.au >>> <mailto:b.ov...@neura.edu.au>> wrote: >>> >>> Hi mailing list, >>> >>> I am currently processing a longitudinal image and have come across a >>> problem at the medial surface in the long image (step 3). As you can see in >>> the attached image, the rh medial surface has been significantly >>> overestimated and extends into the lh surface. This error showed up only in >>> only 1 of the 2 long images for this subject, and both the time-point >>> images and the base are perfectly fine. Do you know why this is happening? >>> >>> <Screen Shot 2017-03-06 at 1.09.53 pm.png> >>> >>> >>> Kind regards, >>> Bronwyn Overs >>> Research Assistant >>> >>> Neuroscience Research Australia >>> Margarete Ainsworth Building >>> Barker Street Randwick Sydney NSW 2031 Australia >>> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >>> >>> neura.edu.au <http://neura.edu.au/> >>> <https://twitter.com/neuraustralia> >>> <https://www.facebook.com/NeuroscienceResearchAustralia> >>> <http://www.neura.edu.au/help-research/subscribe> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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