Hi Bruce, Thank you for offering to take a look at this medial surface problem.
I have uploaded all of the relevant files to through the Martinos Centre FileDrop v2.0 to your email address (fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>). Please let me know if you require any additional information. Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Margarete Ainsworth Building Barker Street Randwick Sydney NSW 2031 Australia M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 neura.edu.au <http://neura.edu.au/> <https://twitter.com/neuraustralia> <https://www.facebook.com/NeuroscienceResearchAustralia> <http://www.neura.edu.au/help-research/subscribe> > On 5 May 2017, at 8:25 am, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > if someone can upload a dataset as well as the exact coordinates of the > problem I'll take a look > > cheers > Bruce > > On Fri, 5 May 2017, Yann Quidé wrote: > >> Hi all, >> We also have the same issue, any idea/suggestion? >> Thanks. >> Yann >> >> On 27 Apr 2017, at 9:43 am, Bronwyn Overs <b.ov...@neura.edu.au> >> wrote: >> Hi Mailing List, >> Still trying to solve the below medial surface problem. Does anyone >> have any ideas? >> Kind regards, >> Bronwyn Overs >> Research Assistant >> Neuroscience Research Australia >> Neuroscience Research Australia >> Margarete Ainsworth Building >> Barker Street Randwick Sydney NSW 2031 Australia >> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >> neura.edu.au <http://neura.edu.au/> >> Follow @neuraustralia on twitter Follow NeuRA on facebook Subscribe to >> the NeuRA Magazine >> >> On 28 Mar 2017, at 10:51 pm, Yann Quidé >> <yannqu...@gmail.com> wrote: >> Dear all, >> I have an equivalent issue with my data. Any idea on how to fix >> this? >> Thanks. >> Yann >> >> Begin forwarded message: >> From: Bronwyn Overs <b.ov...@neura.edu.au> >> Subject: Re: [Freesurfer] Medial Surface Problem >> Date: 20 March 2017 10:28:37 am AEDT >> To: Freesurfer support list >> <freesurfer@nmr.mgh.harvard.edu> >> Reply-To: Freesurfer support list >> <freesurfer@nmr.mgh.harvard.edu> >> Hello again mailing list, >> Can anyone address the possible cause of the medial >> surface problem shown below (overestimating of rh medial >> surface, shows up in the long image and not the tp or base >> images). Forgot to mention that I am using freesurfer v5.3 >> with an updated mris_make_surfaces binary (sourced from >> the development versionat >> ftp://surfer.nmr.mgh.harvard.edu//pub/dist/freesurfer/dev_binaries/cento >> s6_x86_64/ ). >> Here is the image again: >> <unknown.png> >> Kind regards, >> Bronwyn Overs >> Research Assistant >> Neuroscience Research Australia >> Neuroscience Research Australia >> Margarete Ainsworth Building >> Barker Street Randwick Sydney NSW 2031 Australia >> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >> neura.edu.au <http://neura.edu.au/> >> Follow @neuraustralia on twitter Follow NeuRA on facebook >> Subscribe to the NeuRA Magazine >> >> On 6 Mar 2017, at 1:17 pm, Bronwyn Overs >> <b.ov...@neura.edu.au> wrote: >> Hi mailing list, >> I am currently processing a longitudinal image and >> have come across a problem at the medial surface in >> the long image (step 3). As you can see in the >> attached image, the rh medial surface has been >> significantly overestimated and extends into the lh >> surface. This error showed up only in only 1 of the >> 2 long images for this subject, and both the >> time-point images and the base are perfectly fine. >> Do you know why this is happening? >> <Screen Shot 2017-03-06 at 1.09.53 pm.png> >> Kind regards, >> Bronwyn Overs >> Research Assistant >> Neuroscience Research Australia >> Neuroscience Research Australia >> Margarete Ainsworth Building >> Barker Street Randwick Sydney NSW 2031 Australia >> M 0411 308 769 T +61 2 9399 1883 F +61 2 9399 1265 >> neura.edu.au <http://neura.edu.au/> >> Follow @neuraustralia on twitter Follow NeuRA on >> facebook Subscribe to the NeuRA Magazine >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for >> the person to whom it is >> addressed. If you believe this e-mail was sent to >> you in error and the e-mail >> contains patient information, please contact the >> Partners Compliance HelpLine at >> http://www.partners.org/complianceline . If the >> e-mail was sent to you in error >> but does not contain patient information, please >> contact the sender and properly >> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for the >> person to whom it is >> addressed. If you believe this e-mail was sent to you in >> error and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was >> sent to you in error >> but does not contain patient information, please contact >> the sender and properly >> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for the person >> to whom it is >> addressed. If you believe this e-mail was sent to you in error >> and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent >> to you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
