Hi, I am struggling at integrating galaxy with our cluster. I am currently running galaxy on a separate server machine from our LSF cluster. The DRMAA library has been installed on the cluster and I've re-installed galaxy into a shared file system visible and accessible from both the server and the cluster.
I've read the wiki page: http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster and tried to follow the "unified method" without much success so far. After spending some time digging/reading the mailing list, I would like to be sure that I understand the problem well enough before changing our plans. Am I right to think that there is no way to make the system works because I cannot currently configure galaxy to ssh into the cluster head node for submitting jobs to the scheduler? Is the only way forward to have a dedicated cluster node where I could run galaxy on it? Thanks in advance for your help. Kind regards, Anne. -- Anne Pajon, Ph.D. Cancer Research UK - Cambridge Research Institute Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE anne.pa...@cancer.org.uk | +44 (0)1223 404 334 NOTICE AND DISCLAIMER This e-mail (including any attachments) is intended for the above-named person(s). If you are not the intended recipient, notify the sender immediately, delete this email from your system and do not disclose or use for any purpose. We may monitor all incoming and outgoing emails in line with current legislation. We have taken steps to ensure that this email and attachments are free from any virus, but it remains your responsibility to ensure that viruses do not adversely affect you. Cancer Research UK Registered in England and Wales Company Registered Number: 4325234. Registered Charity Number: 1089464 and Scotland SC041666 Registered Office Address: Angel Building, 407 St John Street, London EC1V 4AD. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/