Yes we do have an LSF cluster. Thanks indeed for all the information, Peter. I'll contact our cluster administrator tomorrow and keep you posted on my progress.
Kind regards, Anne. On 2 May 2012, at 22:07, Peter Cock wrote: > On Wed, May 2, 2012 at 9:58 PM, Anne Pajon <anne.pa...@cancer.org.uk> wrote: >> Hi Peter, >> >> Thanks for the clarification, it is really helpful. >> >> Would you mind sharing what needs to be done in >> term of configuration and instalation to transform >> the galaxy server into a submitting job to the cluster? >> Thanks. > > You said you have an LSF cluster - so I have no idea, > sorry :( > > We're using SGE here. I'm presuming similar concepts > apply - in our case a key step was getting qsub/qstat/qdel > to work from the Galaxy server as well as the cluster > head node - which required our cluster administrator to > setup our Galaxy server as an SGE submit node. > > Regards, > > Peter -- Anne Pajon, Ph.D. Cancer Research UK - Cambridge Research Institute Li Ka Shing Centre, Robinson Way, Cambridge CB2 0RE anne.pa...@cancer.org.uk | +44 (0)7958 511 353 NOTICE AND DISCLAIMER This e-mail (including any attachments) is intended for the above-named person(s). If you are not the intended recipient, notify the sender immediately, delete this email from your system and do not disclose or use for any purpose. We may monitor all incoming and outgoing emails in line with current legislation. We have taken steps to ensure that this email and attachments are free from any virus, but it remains your responsibility to ensure that viruses do not adversely affect you. Cancer Research UK Registered in England and Wales Company Registered Number: 4325234. Registered Charity Number: 1089464 and Scotland SC041666 Registered Office Address: Angel Building, 407 St John Street, London EC1V 4AD. ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/