On Wed, May 2, 2012 at 7:18 PM, Anne Pajon <anne.pa...@cancer.org.uk> wrote: > Hi, > > I am struggling at integrating galaxy with our cluster. I am currently > running galaxy on a separate server machine from our LSF cluster. > The DRMAA library has been installed on the cluster and I've > re-installed galaxy into a shared file system visible and accessible > from both the server and the cluster.
That's good - the shared file system is highly recommended. > ... > > Am I right to think that there is no way to make the system > works because I cannot currently configure galaxy to ssh into > the cluster head node for submitting jobs to the scheduler? > > ... Is the Galaxy machine considered a submit node of the cluster? i.e. Can you submit/query/kill cluster jobs at the command line from the Galaxy server? Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/