On Wed, May 2, 2012 at 7:18 PM, Anne Pajon <anne.pa...@cancer.org.uk> wrote:
> Hi,
>
> I am struggling at integrating galaxy with our cluster. I am currently
> running galaxy on a separate server machine from our LSF cluster.
> The DRMAA library has been installed on the cluster and I've
> re-installed galaxy into a shared file system visible and accessible
> from both the server and the cluster.

That's good - the shared file system is highly recommended.

> ...
>
> Am I right to think that there is no way to make the system
> works because I cannot currently configure galaxy to ssh into
> the cluster head node for submitting jobs to the scheduler?
>
> ...

Is the Galaxy machine considered a submit node of the cluster?
i.e. Can you submit/query/kill cluster jobs at the command line
from the Galaxy server?

Peter
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