On Sat, Feb 15, 2014 at 12:25 PM, Greg Von Kuster <g...@bx.psu.edu> wrote:

> Hi Peter,
> On Feb 3, 2014, at 7:01 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> Moreover there is a similar problem with the matching repository
> on the Test Tool Shed,
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/blastxml_to_top_descr
> 2014-01-04 showing failed tests for proteomics_search_tandem_1
> 2013-12-20 showing failed tests for proteomics_search_tandem_1
> 2013-12-18 tests for blastxml_to_top_descr passed
> 2013-12-17 tests for blastxml_to_top_descr passed
> Like the same repository on the main tool shed, the above issue were fixed
> for the blastxml_to_top_descr on the test tool shed in
> https://bitbucket.org/galaxy/galaxy-central/commits/e3a4d4d813fdb8a34cfd6d596e0f4bbdb2d9e211

Great, thanks.

> --
> Returning to the MIRA4 problem, I got a meaningful test
> failure which I fixed (I hadn't set an environment variable
> in the install script), but I now get only partial test output:
> http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler
> ...
> That's all fine, but where are the test results for mira_bait which
> I would expect to pass?
> It looks lie the mira_bait tests results are being populated, bu
the tests are failing, not passing.  This doesn't look like an
issue with the Tool Shed's install and test framework.

Confirmed - the Tool Shed issue where only partial test output
was shown is fixed (did you work out why the test output was

I was hoping to see a passing test, but I can now see a failing
test (still something not quite right with my dependency
installation script - I'll look at this next week hopefully).


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