Hi Peter, We'll try to get some time to look at your tool_dependencies.xml recipe as soon as possible.
Greg Von Kuster On Feb 18, 2014, at 5:47 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > > Hi Greg, Dave, > > RE: http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler > > Same as before, although now both the mirabait and mira de novo > tests are attempted: > > Missing mirabait under $MIRA4, > '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mirabait' > Folder contained: env.sh > > Missing mira under $MIRA4, > '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mira' > Folder contained: env.sh > > My Python wrapper checks the $MIRA4 environment variable, > which should be the $INSTALL_DIR location which should hold > the MIRA binaries (mira, mirabait, etc). According to the Python > wrapper, the $MIRA variable was set to: > > /ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/ > > However, the Python wrapper reports this folder only contains > one file, env.sh - which leads me to suspect a glitch in my > tool_dependencies.xml and/or the installation framework. > > Regards, > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > http://lists.bx.psu.edu/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/