Hi Peter,

We'll try to get some time to look at your tool_dependencies.xml recipe as soon 
as possible.

Greg Von Kuster


On Feb 18, 2014, at 5:47 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> 
> Hi Greg, Dave,
> 
> RE: http://testtoolshed.g2.bx.psu.edu/view/peterjc/mira4_assembler
> 
> Same as before, although now both the mirabait and mira de novo
> tests are attempted:
> 
> Missing mirabait under $MIRA4,
> '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mirabait'
> Folder contained: env.sh
> 
> Missing mira under $MIRA4,
> '/ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/mira'
> Folder contained: env.sh
> 
> My Python wrapper checks the $MIRA4 environment variable,
> which should be the $INSTALL_DIR location which should hold
> the MIRA binaries (mira, mirabait, etc). According to the Python
> wrapper, the $MIRA variable was set to:
> 
> /ToolDepsTest/MIRA/4.0/peterjc/mira4_assembler/133b863a8a40/
> 
> However, the Python wrapper reports this folder only contains
> one file, env.sh - which leads me to suspect a glitch in my
> tool_dependencies.xml and/or the installation framework.
> 
> Regards,
> 
> Peter
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