I have a local installation of galaxy on my server.  When I run tophat2, the 
job runs but then throws this error:
Traceback (most recent call last):
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/runners/local.py", line 129, 
in queue_job
    job_wrapper.finish( stdout, stderr, exit_code )
  File "/home/galaxy/galaxy-dist/lib/galaxy/jobs/__init__.py", line 1107, in 
    dataset.datatype.set_meta( dataset, overwrite=False )  # call 
datatype.set_meta directly for the initial set_meta call during dataset creation
  File "/home/galaxy/galaxy-dist/lib/galaxy/datatypes/binary.py", line 250, in 
    raise Exception, "Error Setting BAM Metadata: %s" % stderr
Exception: Error Setting BAM Metadata: Samtools-htslib-API: bam_index_build2() 
not yet implemented
Aborted (core dumped)

Any advice would be appreciated.

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