Nope, it still isn't working. I deleted tophat2, package_tophat2 and package_samtools and then reinstalled tophat2 from Galaxy main. Here are what I think are the relevant installed packages:
tophat2 package_tophat2_2_0_9 package_samtools_0_1_18 Any other advice would be appreciated. > On Feb 23, 2015, at 8:23 AM, Saket Choudhary <[email protected]> wrote: > > On 22 February 2015 at 23:17, Michael Thon <[email protected]> wrote: >> bam_index_build2() not yet > > Hi Michael, > > This seems to be related to this: > https://github.com/samtools/samtools/issues/199 > > You should probably switch to samtools 0.1.19 > > Saket ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
