Glad you got it working! Tests that use tool data tables should work in planemo - however you will need to configure the data table for the tool though. Here is an example of the how to setup a test data for a tool data table:
https://github.com/jmchilton/picard/commit/4df8974384081ee1bb0f97e1bb8d7f935ba09d73 planemo will detect the tool data table file automatically if it is sitting new to the tool or an explicit file can be passed in with (--tool_data_table) http://planemo.readthedocs.org/en/latest/commands.html#test-command. -John On Sat, Feb 28, 2015 at 7:15 AM, Peter Cock <p.j.a.c...@googlemail.com> wrote: > On Fri, Feb 27, 2015 at 10:36 PM, Dooley, Damion <damion.doo...@bccdc.ca> > wrote: >> Yay, with your tip, galaxy direct tests now work with tool_conf.xml AND data >> table in place! >> >> Galaxy DOC person: please update >> https://wiki.galaxyproject.org/Admin/RunningTests >> to state that tool_conf.xml.sample is NOT used for testing! It is stated in >> the >> run_tests.sh help info half way down the page. > > Done - well spotted. I updated the run_test.sh help output that line was from. > > Peter > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
