I get this problem from time to time. When it is messed up, if I go through 
the preview one image at a time I generally find that it is caused by just 
a few pictures and not all of them are a mess.

Near as I can tell it is caused when optimizing some of the lens 
parameters(I have not narrowed it down to a single one yet, currently I am 
thinking that any of the lens settings can mess it up). My work around has 
been to either ingorne it as it does not show up in the final pano or use 
the other preview. If I really want to use the GL preview I have found that 
reseting the lens parameters and optimizing again will solve the problem 
almost every time.

For debugging I find this in both the 2012 and 2013 versions. As far as 
lens on the camera I have found it with every camera that I have used, a 
point and shoot as well as a 30mm and 12 mm(after adjusting for sensor 
size) lens.

I am pretty sure the problem is that the GL preview has a problem with the 
lens optimizations from time to time. At one point I went through and 
messed up the settings one at a time to see what each does and it is easy 
to take a normal good looking pano and make it look like modern art with 
the GL preview. To do that take any good pano, go to the lens tab and 
change any of the lens settings by 2 or more whole numbers and it will be 
way out of whack, some times it takes a lot less.

Near as I can tell the other preview does not do it.

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