> On Monday 18 April 2005 19:37, Miguel wrote:
>> > The polygon is a line through all vertices?
>>
>> In the pmesh format they polygons are triangles or quadrilaterals.
>
> Ok, so I have to take three/four ints at a time in the pmesh file?

Correct.

>> I do not understand how there could be one line that passes through all
>> vertices.
>
> Ok, makes sense.
>
>> > And thus defines the triangles that Jmol should draw?
>>
>> I do not know
>
> Ummm... say these polygons in the pmesh are triangles, then Jmol draws
> triangles correct?

Correct

>> > Q1: What are the options to draw a surface with just vertices defined?
>>
>> There is no support for that today.
>
> Ok. If I understand correctly, the missing step is defining the triangles
> based on those vertices? Correct? Say we had this implemented we could
> also
> draw the molecular surfaces, correct?

Yes

>> > Q2: Say we want to color this surface, and that each vertices has a
>> value
>> > associated, would it be possible to color the surface according to
>> these
>> > given values (on a scale, like done with partial charges...)?
>>
>> This is not possible today. But it would not be difficult to add this
>> functionality.
>
> Good. E.g. think of coloring the molecular surface by partial atomic
> charges,
> like the dots of those surfaces are colored now...

OK, I will think about that.

It is probably the case that today an entire pmesh surface is colored the
same.

Q: Do you want to assign a unique color to each point on the surface or to
each face of the surface?

Q: How would one want to specify the mapping between colors and points/faces?


Miguel



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