Feature Requests item #1555606, was opened at 2006-09-09 21:39 Message generated for change (Comment added) made by molvisions You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1555606&group_id=23629
Please note that this message will contain a full copy of the comment thread, including the initial issue submission, for this request, not just the latest update. Category: Interface Improvements Group: None Status: Closed Priority: 4 Submitted By: molvisions (molvisions) Assigned to: Bob Hanson (hansonr) Summary: color selection halos Initial Comment: hi, this is pretty minor, but possibly pretty easy as a result. might it be possible to be able to control the color of selection halos via a script command? for example: set display selected select atomno=3 # gold halo around atomno 3 color halos magenta select atomno=4 # magenta halo around atomno 4 thoughts? thanks, tim d ---------------------------------------------------------------------- >Comment By: molvisions (molvisions) Date: 2006-09-14 21:36 Message: Logged In: YES user_id=920824 very cool; can't wait to try it out. thanks, Bob. tim ---------------------------------------------------------------------- Comment By: Bob Hanson (hansonr) Date: 2006-09-14 20:11 Message: Logged In: YES user_id=1082841 Actually, this is a terrific idea. I've deprecated "set display selected" because I can never remember how to undo it. So now we have set selectionHalos ON/OFF from http://www.stolaf.edu/academics/chemapps/jmol/docs/#halos halos # Jmol 10.9.59 introduces the "halo" object, similar to in action to "stars" but a ring instead of a cross. These are the "selection halos" generalized, colorable, and sizable. Halos have a different default color setting if generated using "halos on" (color of the atom) or "select *;set display selected". In the latter case, the color is the "selectionHalos" color, originally gold, but settable using "color selectionhalos xxxx". load caffeine.xyz select nitrogen color halos red halos 20% # default is 20% of Van der Waals radius halos 0.5 select oxygen color halos blue select *;halos on # resets to the default size halos off select atomno<10 set selectionHalos ON color selectionHalos yellow # only affect the uncolored ones color selectionHalos none # back to atom-based colors select nitrogen;color halos violet;select * # overriding color halos none # back to the ORIGINAL atom colors color selectionHalos gold # the original settings set selectionHalos OFF load 1crn.pdb color halos group; halos on color halos amino; halos off ---------------------------------------------------------------------- Comment By: molvisions (molvisions) Date: 2006-09-12 10:47 Message: Logged In: YES user_id=920824 hi Bob, as long as option 3 (explicit coloring of seleciton halos) responds to 'set display selected', and isn't restricted to the 'halos on' command, this sounds peachy to me. IOW select atomno=3 color halos white set display selected should show a white halo for atomno=3, whenever it is selected. best, tim ---------------------------------------------------------------------- Comment By: Bob Hanson (hansonr) Date: 2006-09-12 08:43 Message: Logged In: YES user_id=1082841 Idea is that 1) there is a default halo color (already in place) color selectionHalo red set display selected 2) each selection halo can be colored based on its underlying atom (proposed): color selectionHalo none 3) any selected set of atoms can have their halos explicitly set and displayed and sized?: select atomno=3 color halos white halos on halos 50% Revise as desired. bob ---------------------------------------------------------------------- You can respond by visiting: https://sourceforge.net/tracker/?func=detail&atid=379136&aid=1555606&group_id=23629 ------------------------------------------------------------------------- Using Tomcat but need to do more? Need to support web services, security? Get stuff done quickly with pre-integrated technology to make your job easier Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642 _______________________________________________ Jmol-developers mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-developers
