Selecting a model does not select an isosurface. So you need to do:

     isosurface deoxyBpgSurf MODEL 1.1 "08solvdeoxybpg.jvxl"
     isosurface oxySurf MODEL 1.2 "08solvoxy.jvxl"

     model 1.2
     isosurface oxySurf off

     model 1.1
     isosurface deoxyBpgSurf off


Frieda Reichsman wrote:

> Hi,
>
> I have two models loaded, each with an associated surface:
>      isosurface deoxyBpgSurf MODEL 1.1 "08solvdeoxybpg.jvxl"
>      isosurface oxySurf MODEL 1.2 "08solvoxy.jvxl"
>
> Whichever surface I load first becomes unresponsive to isosurface 
> on/off commands. So for example,
>      model 1.2
>      isosurface off
> turns off the surface associated with model 1.2, but
>      model 1.1
>      isosurface off
> leaves the surface associated with model 1.1 in place. 
>
> When I issue the original isosurface (jvxl) commands in the reverse 
> order, I can control the surface associated with model 1.1 using 
> isosurface on/off, but the surface associated with model 1.2 will not 
> respond to isosurface on/off. Is this a bug?
>
I think it's just because you aren't selecting the isosurface by name.

> I've tested this in Jmol 11.3.12 and Jmol 11.3.10_dev.
>
> Frieda
>
>
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> Frieda Reichsman
>
> Molecules in Motion
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get. 

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900



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