Frieda Reichsman wrote: >On Aug 26, 2007, at 1:21 PM, Bob Hanson wrote: > > > >>Selecting a model does not select an isosurface. So you need to do: >> >> isosurface deoxyBpgSurf MODEL 1.1 "08solvdeoxybpg.jvxl" >> isosurface oxySurf MODEL 1.2 "08solvoxy.jvxl" >> >> model 1.2 >> isosurface oxySurf off >> >> model 1.1 >> isosurface deoxyBpgSurf off >> >> > >Aha - OK, I had tried selecting the isosurface, but it failed because >I used > isosurface $deoxyBpgSurf off > >Now since > color $deoxyBpgSurf lightblue >is correct, what is the rule for determining when to use the $ sign >in front of an object name? > > > The $ is used only when other words like "atoms" or "bonds" or an atom selection might be appropriate, so as to clearly indicate that this is an object identifier.
color atoms green color $someObject yellow center (atomno=3) center $someDrawObject draw line1 (atomno=3) (atomno=4) draw line2 (atomno=5) (atomno=7) draw line3 $line1 $line2 center $line3 isosurface mySurface select(model=1.2) molecular color $mySurface blue That sort of thing. Bob >Thanks, >Frieda > > > > >>Frieda Reichsman wrote: >> >> >> >>>Hi, >>> >>>I have two models loaded, each with an associated surface: >>> isosurface deoxyBpgSurf MODEL 1.1 "08solvdeoxybpg.jvxl" >>> isosurface oxySurf MODEL 1.2 "08solvoxy.jvxl" >>> >>>Whichever surface I load first becomes unresponsive to isosurface >>>on/off commands. So for example, >>> model 1.2 >>> isosurface off >>>turns off the surface associated with model 1.2, but >>> model 1.1 >>> isosurface off >>>leaves the surface associated with model 1.1 in place. >>> >>>When I issue the original isosurface (jvxl) commands in the reverse >>>order, I can control the surface associated with model 1.1 using >>>isosurface on/off, but the surface associated with model 1.2 will not >>>respond to isosurface on/off. Is this a bug? >>> >>> >>> >>I think it's just because you aren't selecting the isosurface by name. >> >> >> >>>I've tested this in Jmol 11.3.12 and Jmol 11.3.10_dev. >>> >>>Frieda >>> >>> >>> >>> > > >------------------------------------------------------------------------- >This SF.net email is sponsored by: Splunk Inc. >Still grepping through log files to find problems? Stop. >Now Search log events and configuration files using AJAX and a browser. >Download your FREE copy of Splunk now >> http://get.splunk.com/ >_______________________________________________ >Jmol-users mailing list >[email protected] >https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
