On Aug 26, 2007, at 1:21 PM, Bob Hanson wrote:
> Selecting a model does not select an isosurface. So you need to do:
>
> isosurface deoxyBpgSurf MODEL 1.1 "08solvdeoxybpg.jvxl"
> isosurface oxySurf MODEL 1.2 "08solvoxy.jvxl"
>
> model 1.2
> isosurface oxySurf off
>
> model 1.1
> isosurface deoxyBpgSurf off
Aha - OK, I had tried selecting the isosurface, but it failed because
I used
isosurface $deoxyBpgSurf off
Now since
color $deoxyBpgSurf lightblue
is correct, what is the rule for determining when to use the $ sign
in front of an object name?
Thanks,
Frieda
>
>
> Frieda Reichsman wrote:
>
>> Hi,
>>
>> I have two models loaded, each with an associated surface:
>> isosurface deoxyBpgSurf MODEL 1.1 "08solvdeoxybpg.jvxl"
>> isosurface oxySurf MODEL 1.2 "08solvoxy.jvxl"
>>
>> Whichever surface I load first becomes unresponsive to isosurface
>> on/off commands. So for example,
>> model 1.2
>> isosurface off
>> turns off the surface associated with model 1.2, but
>> model 1.1
>> isosurface off
>> leaves the surface associated with model 1.1 in place.
>>
>> When I issue the original isosurface (jvxl) commands in the reverse
>> order, I can control the surface associated with model 1.1 using
>> isosurface on/off, but the surface associated with model 1.2 will not
>> respond to isosurface on/off. Is this a bug?
>>
> I think it's just because you aren't selecting the isosurface by name.
>
>> I've tested this in Jmol 11.3.12 and Jmol 11.3.10_dev.
>>
>> Frieda
>>
>>
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