Phil, are you thinking these files are coming from the web? Jmol is trying
to get them from your hard drive. (or the user's hard drive). For certain is
the Jar file somewhere on this path?
/Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb
Bob
On Mon, Jun 7, 2010 at 5:16 PM, Philip Bays <[email protected]> wrote:
> For a number of years I have had a series of tutorials that students have
> successfully used. I was using a pretty old version of Jmol and recently
> updated the website, incorporating a newer version (11.8.24). The tutorials
> using Jmol work fine on the Mac for all browsers except Mozilla (Firefox,
> Camino, Seamonkey). On these browsers the applet loads and the first
> structure is shown. However, subsequent reloads of the applet fail. They
> fail completely on windows machines with Firefox but run with IE. In the
> Firefox applet window on the mac I get the statement:
>
> java.security.AccessControlException: access denied
>
> The Java console gives a permissions error as shown below.
>
> FileManager.getAtomSetCollectionFromFile(Acyclic/M4/S.pdb)
> //Acyclic/M4/S.pdb
> FileManager opening
> file:/Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb
> file ERROR:
> file:/Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb
> java.security.AccessControlException: access denied (java.io.FilePermission
> /Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb read)
> openFile(Acyclic/M4/S.pdb): 275 ms
> eval ERROR: java.security.AccessControlException: access denied
> (java.io.FilePermission
> /Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb read)
> ----
> load >> "Acyclic/M4/S.pdb" <<
>
> Any quick clue as to what is happening and what changed? FYI: I did try
> 12.0RC12 and it behaved the same way.
>
> Phil
>
>
> J. Philip Bays
> Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> (574) 284-4663
> [email protected]
>
>
>
>
>
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--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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