Bob:
The jar file is in a directory (Jmol) at the Sites level. So Acyclic -- the
program calling the applet -- is below is below it it as prescribed. It works
non-Mozilla browsers on the mac in Safari. And the same setup is on the web
where I observe the same issue.
Phil
On Jun 8, 2010, at 1:03 AM, Robert Hanson wrote:
> Phil, are you thinking these files are coming from the web? Jmol is trying to
> get them from your hard drive. (or the user's hard drive). For certain is the
> Jar file somewhere on this path?
>
> /Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb
>
> Bob
>
>
> On Mon, Jun 7, 2010 at 5:16 PM, Philip Bays <[email protected]> wrote:
> For a number of years I have had a series of tutorials that students have
> successfully used. I was using a pretty old version of Jmol and recently
> updated the website, incorporating a newer version (11.8.24). The tutorials
> using Jmol work fine on the Mac for all browsers except Mozilla (Firefox,
> Camino, Seamonkey). On these browsers the applet loads and the first
> structure is shown. However, subsequent reloads of the applet fail. They
> fail completely on windows machines with Firefox but run with IE. In the
> Firefox applet window on the mac I get the statement:
>
> java.security.AccessControlException: access denied
>
> The Java console gives a permissions error as shown below.
>
> FileManager.getAtomSetCollectionFromFile(Acyclic/M4/S.pdb) //Acyclic/M4/S.pdb
> FileManager opening
> file:/Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb
> file ERROR: file:/Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb
> java.security.AccessControlException: access denied (java.io.FilePermission
> /Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb read)
> openFile(Acyclic/M4/S.pdb): 275 ms
> eval ERROR: java.security.AccessControlException: access denied
> (java.io.FilePermission
> /Users/pbays/Sites/Programs/Stereochemistry/Acyclic/M4/S.pdb read)
> ----
> load >> "Acyclic/M4/S.pdb" <<
>
> Any quick clue as to what is happening and what changed? FYI: I did try
> 12.0RC12 and it behaved the same way.
>
> Phil
>
>
> J. Philip Bays
> Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> (574) 284-4663
> [email protected]
>
>
>
>
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>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> ------------------------------------------------------------------------------
> ThinkGeek and WIRED's GeekDad team up for the Ultimate
> GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the
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J. Philip Bays
Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
(574) 284-4663
[email protected]
------------------------------------------------------------------------------
ThinkGeek and WIRED's GeekDad team up for the Ultimate
GeekDad Father's Day Giveaway. ONE MASSIVE PRIZE to the
lucky parental unit. See the prize list and enter to win:
http://p.sf.net/sfu/thinkgeek-promo
_______________________________________________
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