Thanks all. I am looking at the suggestions.
However, I found that if I go to another account on my macing, the pages work
fine in Firefox. This clearly means it is a cache problem. I have gone back
to my account, as as Egan said, it is a pain to determine how to delete
everything that needs deleted. Furthermore, it appears that Camino and Firefox
behave differently. So you may get it running on Camino and kill firefox.
But I am still playing.
Obviously I have to learn to use Jmol.js:-)
Phil
On Jun 8, 2010, at 11:52 AM, Robert Hanson wrote:
> OK, so on a Mac here at St. Olaf (sorry -- no details) this site worked fine.
>
> The file can't be opened locally because the jar file is not on the path to
> it. Generally speaking, you can't use ../../Jmol.... for the Jar file
> location and then just ./xxxx.pdb for the file.
>
> Also, Phil, if you aren't using Jmol.js, you should at least use
> JmolApplet0.jar, not JmolApplet.jar. You are requiring a 1.6Mb download just
> to start.
>
> Bob
>
>
> On Tue, Jun 8, 2010 at 10:35 AM, Robert Hanson <[email protected]> wrote:
> The critical information comes from the Java console:
>
> urlImage=jar:http://www.saintmarys.edu/~pbays/Jmol/JmolApplet.jar!/jmol75x29x8.gif
>
> [this tells us where the Jar file is located]
>
> FileManager.getAtomSetCollectionFromFile(Acyclic/M5/R.pdb)
> FileManager opening
> http://www.saintmarys.edu/~pbays/Programs/Stereochemistry/Acyclic/M5/R.pdb
>
> [this tells us where the file is located .. no problem with this load.]
>
>
>
> So what are those two values on the Mac?
>
>
>
> --
> Robert M. Hanson
> Professor of Chemistry
> St. Olaf College
> 1520 St. Olaf Ave.
> Northfield, MN 55057
> http://www.stolaf.edu/people/hansonr
> phone: 507-786-3107
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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J. Philip Bays
Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
(574) 284-4663
[email protected]
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