OK, so on a Mac here at St. Olaf (sorry -- no details) this site worked
fine.
The file can't be opened locally because the jar file is not on the path to
it. Generally speaking, you can't use ../../Jmol.... for the Jar file
location and then just ./xxxx.pdb for the file.
Also, Phil, if you aren't using Jmol.js, you should at least use
JmolApplet0.jar, not JmolApplet.jar. You are requiring a 1.6Mb download just
to start.
Bob
On Tue, Jun 8, 2010 at 10:35 AM, Robert Hanson <[email protected]> wrote:
> The critical information comes from the Java console:
>
> urlImage=jar:
> http://www.saintmarys.edu/~pbays/Jmol/JmolApplet.jar!/jmol75x29x8.gif<http://www.saintmarys.edu/%7Epbays/Jmol/JmolApplet.jar%21/jmol75x29x8.gif>
>
> [this tells us where the Jar file is located]
>
> FileManager.getAtomSetCollectionFromFile(Acyclic/M5/R.pdb)
> FileManager opening
> http://www.saintmarys.edu/~pbays/Programs/Stereochemistry/Acyclic/M5/R.pdb<http://www.saintmarys.edu/%7Epbays/Programs/Stereochemistry/Acyclic/M5/R.pdb>
>
> [this tells us where the file is located .. no problem with this load.]
>
>
>
> So what are those two values on the Mac?
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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