Hi Paul, Now the downloadable resources are available on biodb2 XMLRPC server.
Two ways to build NLMSA. 1. metabase >>> import os >>> os.environ['WORLDBASEPATH'] = '., http://biodb2.bioinformatics.ucla.edu:5000' >>> from pygr import metabase >>> mdb = metabase.MetabaseList() >>> hg18 = mdb('Bio.MSA.UCSC.hg18_multiz44way',download=True) 2. from text files download text files from http://biodb.bioinformatics.ucla.edu/PYGRDATA/ use cnestedlist.textfile_to_binaries('hg18_multiz44way') function to convert from text to binaries If you want to see the script used to add these resources, visit this URL. http://github.com/deepreds/pygr/tree/d7ab9247dcd39b7d474029cb8749a53eb8582968/tests/biodb2_update Yours, Namshin Kim On Sat, Aug 1, 2009 at 3:42 AM, Paul Rigor (gmail) <paulri...@gmail.com>wrote: > Hi, When will the downloadable resources be available? We've successfully > rebuilt the 44way alignment. But just in case ;-) > Thanks, > Paul > > On Wed, Jul 29, 2009 at 7:01 PM, Christopher Lee <l...@chem.ucla.edu>wrote: > >> >> Awesome! Thanks! >> >> -- Chris >> >> >> > > > -- > Paul Rigor > http://www.paulrigor.net/ > http://www.ics.uci.edu/~prigor > > > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
