Hi Namshin, I'm running this over night =) Has anyone successfully pulled and used this alignment?
Thanks, Paul On Sun, Aug 2, 2009 at 4:40 PM, Namshin Kim <deepr...@gmail.com> wrote: > Now the downloadable resources are available on biodb2 XMLRPC server. > > Two ways to build NLMSA. > > 1. metabase > > >>> import os > >>> os.environ['WORLDBASEPATH'] = '., > http://biodb2.bioinformatics.ucla.edu:5000' > >>> from pygr import metabase > >>> mdb = metabase.MetabaseList() > >>> hg18 = mdb('Bio.MSA.UCSC.hg18_multiz44way',download=True) > > 2. from text files > > download text files from http://biodb.bioinformatics.ucla.edu/PYGRDATA/ > use cnestedlist.textfile_to_binaries('hg18_multiz44way') function to > convert from text to binaries > > If you want to see the script used to add these resources, visit this URL. > > > http://github.com/deepreds/pygr/tree/d7ab9247dcd39b7d474029cb8749a53eb8582968/tests/biodb2_update > > --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "pygr-dev" group. To post to this group, send email to pygr-dev@googlegroups.com To unsubscribe from this group, send email to pygr-dev+unsubscr...@googlegroups.com For more options, visit this group at http://groups.google.com/group/pygr-dev?hl=en -~----------~----~----~----~------~----~------~--~---
