Messages by Date
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2016/01/12
Re: [R-sig-phylo] getBtimes vs. branching.times
Dan Rabosky
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2016/01/12
Re: [R-sig-phylo] extract parent-child from newick
Klaus Schliep
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2016/01/12
[R-sig-phylo] extract parent-child from newick
Yampolsky, Lev
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2016/01/12
[R-sig-phylo] getBtimes vs. branching.times
Yampolsky, Lev
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2016/01/11
Re: [R-sig-phylo] Package phytools load failed
Rupert Collins
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2016/01/11
[R-sig-phylo] NAns in HiSSE
Lena Frenzke
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2016/01/09
Re: [R-sig-phylo] Package phytools load failed
Vojtěch Zeisek
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2016/01/09
Re: [R-sig-phylo] Package phytools load failed
Klaus Schliep
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2016/01/09
Re: [R-sig-phylo] Package phytools load failed
Liam J. Revell
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2016/01/09
Re: [R-sig-phylo] Package phytools load failed
William Gearty
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2016/01/09
Re: [R-sig-phylo] Package phytools load failed
Donald Miles
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2016/01/09
Re: [R-sig-phylo] Package phytools load failed
Vojtěch Zeisek
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2016/01/09
[R-sig-phylo] Package phytools load failed
Gabriela Wofkova
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2016/01/06
Re: [R-sig-phylo] Fwd: Error message when running gls with estimated lambda
Zenil-Ferguson,Rosana
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2016/01/06
[R-sig-phylo] Fwd: Error message when running gls with estimated lambda
Antonella Soro
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2016/01/06
[R-sig-phylo] thread response spam
Hilmar Lapp
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2016/01/05
Re: [R-sig-phylo] plot trees distribution
Simon Blomberg
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2016/01/05
Re: [R-sig-phylo] plot trees distribution
Giulio V. Dalla Riva
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2016/01/05
Re: [R-sig-phylo] plot trees distribution
Liam J. Revell
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2016/01/05
Re: [R-sig-phylo] Disagreement between "length" of data and "length" of phylogeny
Eduardo Ascarrunz
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2016/01/04
[R-sig-phylo] Disagreement between "length" of data and "length" of phylogeny
Michael Pauers
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2016/01/04
Re: [R-sig-phylo] How to embed a function within a matrix
Simon Blomberg
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2016/01/04
[R-sig-phylo] How to embed a function within a matrix
Alexandre F. Souza
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2016/01/01
Re: [R-sig-phylo] Calculating branch lengths on a multiphylo object
Michael Pauers
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2016/01/01
[R-sig-phylo] Error in .jinit() : Cannot create Java virtual machine (-6) using dismo
Agus Camacho
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2016/01/01
Re: [R-sig-phylo] Calculating branch lengths on a multiphylo object
Klaus Schliep
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2015/12/31
[R-sig-phylo] Calculating branch lengths on a multiphylo object
Michael Pauers
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2015/12/24
[R-sig-phylo] add geoscale to histogram or density plot
John Denton
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2015/12/21
Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees
Ross Mounce
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2015/12/21
Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees
Mark Holder
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2015/12/21
[R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees
Ross Mounce
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2015/12/18
Re: [R-sig-phylo] Detecting homoplasy
Klaus Schliep
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2015/12/17
[R-sig-phylo] interpreting PGLS results when lambda>1
Zach Culumber
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2015/12/17
[R-sig-phylo] Detecting homoplasy
Read, Timothy D
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2015/12/17
[R-sig-phylo] Problems with dependency Biostrings
Klaus Schliep
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2015/12/13
Re: [R-sig-phylo] Bug report in ape::root
Emmanuel Paradis
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2015/12/13
[R-sig-phylo] Postdoctoral Fellowship available in New Zealand
Libby Liggins
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2015/12/12
[R-sig-phylo] Bug report in ape::root
Liam J. Revell
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2015/12/11
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6
Jacob Berv
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2015/12/11
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6
Jacob Berv
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2015/12/10
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6
David Bapst
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2015/12/10
Re: [R-sig-phylo] Plotting sampled-ancestor trees in R
David Bapst
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2015/12/10
Re: [R-sig-phylo] Implementation of Mir et al.'s (2013) tree balance index
krzysztofbartoszek
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2015/12/10
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6
Yu, Guangchuang
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2015/12/09
[R-sig-phylo] Implementation of Mir et al.'s (2013) tree balance index?
Gabriel Yedid
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2015/12/09
Re: [R-sig-phylo] Plotting sampled-ancestor trees in R
Roger Close
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2015/12/08
[R-sig-phylo] Fwd: Community analysis of average plant trait values with phylogenetic context
Benjamin O'Leary
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2015/12/08
Re: [R-sig-phylo] Plotting sampled-ancestor trees in R
David Bapst
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2015/12/08
Re: [R-sig-phylo] Plotting sampled-ancestor trees in R
Emmanuel Paradis
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2015/12/08
[R-sig-phylo] Plotting sampled-ancestor trees in R
Roger Close
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2015/12/08
Re: [R-sig-phylo] Fwd: rate units in fitContinuous
Karla Shikev
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2015/12/08
Re: [R-sig-phylo] Fwd: rate units in fitContinuous
Julien Clavel
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2015/12/08
[R-sig-phylo] Fwd: rate units in fitContinuous
Karla Shikev
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2015/12/07
Re: [R-sig-phylo] rate units in fitContinuous
Josef C Uyeda
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2015/12/07
[R-sig-phylo] rate units in fitContinuous
Karla Shikev
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2015/12/07
[R-sig-phylo] Medusa analysis on posterior sample of trees
Ernesto De Castro
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2015/12/06
Re: [R-sig-phylo] BiSSE models on multiphylo objects
Daniel Caetano
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2015/12/04
[R-sig-phylo] BiSSE models on multiphylo objects
Arbuckle, Kevin
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2015/11/30
Re: [R-sig-phylo] 3 dimensional ordination of tree distances
Jombart, Thibaut
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2015/11/30
[R-sig-phylo] 3 dimensional ordination of tree distances
Chris Buddenhagen
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2015/11/30
Re: [R-sig-phylo] Fitting Brownian evolution with bounds
Florian Boucher
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2015/11/30
Re: [R-sig-phylo] Fitting Brownian evolution with bounds
Brian O'Meara
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2015/11/30
[R-sig-phylo] Fitting Brownian evolution with bounds
saurabh
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2015/11/27
Re: [R-sig-phylo] read tree labels without single quotes
Liam J. Revell
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2015/11/27
[R-sig-phylo] read tree labels without single quotes
Fabian Roger
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2015/11/24
Re: [R-sig-phylo] changepoints in speciation-through-time?
Simon Joly
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2015/11/24
Re: [R-sig-phylo] changepoints in speciation-through-time?
Matt Pennell
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2015/11/24
[R-sig-phylo] changepoints in speciation-through-time?
John Denton
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2015/11/18
Re: [R-sig-phylo] next release of ape
Emmanuel Paradis
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2015/11/17
Re: [R-sig-phylo] Mapping gene gain loss info to rooted species tree
Anand K S Rao
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2015/11/16
Re: [R-sig-phylo] Mapping gene gain loss info to rooted species tree
Anand K S Rao
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2015/11/16
Re: [R-sig-phylo] Mapping gene gain loss info to rooted species tree
Klaus Schliep
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2015/11/16
[R-sig-phylo] Mapping gene gain loss info to rooted species tree
Anand K S Rao
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2015/11/13
Re: [R-sig-phylo] Error with rerootingMethod in phytools
Liam J. Revell
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2015/11/12
Re: [R-sig-phylo] Error with rerootingMethod in phytools
Liam J. Revell
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2015/11/12
[R-sig-phylo] Error with rerootingMethod in phytools
Graeme Lloyd
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2015/11/12
[R-sig-phylo] diversitree: asr bug, equal-rate model with root constraint
Sébastien Lavergne
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2015/11/11
[R-sig-phylo] BAMM and BAMMtools package: updated, overhauled
Dan Rabosky
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2015/11/07
Re: [R-sig-phylo] ASR tree with highlighted state-changes
Liam J. Revell
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2015/11/06
Re: [R-sig-phylo] ASR tree with highlighted state-changes
Todd Oakley
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2015/11/06
Re: [R-sig-phylo] ASR tree with highlighted state-changes
Richard Harris
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2015/11/05
Re: [R-sig-phylo] ASR tree with highlighted state-changes
Liam J. Revell
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2015/11/05
[R-sig-phylo] ASR tree with highlighted state-changes
Richard Harris
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2015/11/05
Re: [R-sig-phylo] Plotting ancestral states from estimation on multiphylo object
Arbuckle, Kevin
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2015/11/04
Re: [R-sig-phylo] Plotting ancestral states from estimation on multiphylo object
Liam J. Revell
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2015/11/04
[R-sig-phylo] Plotting ancestral states from estimation on multiphylo object
Arbuckle, Kevin
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2015/11/04
[R-sig-phylo] distance matrix for phylogeny
Rufaida Al Breiki
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2015/11/04
Re: [R-sig-phylo] Error message when running gls with estimated lambda
Emmanuel Paradis
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2015/11/03
Re: [R-sig-phylo] add.species.to.genus with pure birth branch lengths
Karla Shikev
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2015/11/03
[R-sig-phylo] phylogenetic PCA including categorical variables
Sereina Graber
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2015/11/02
Re: [R-sig-phylo] Error message when running gls with estimated lambda
Antonella Soro
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2015/11/02
Re: [R-sig-phylo] Adding random branches to tree recursively
Juan Antonio Balbuena
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2015/11/02
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Rob Lanfear
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2015/11/01
Re: [R-sig-phylo] Adding random branches to tree recursively
Liam J. Revell
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2015/10/30
Re: [R-sig-phylo] Adding random branches to tree recursively
Eliot Miller
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2015/10/30
Re: [R-sig-phylo] Adding random branches to tree recursively
Liam J. Revell
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2015/10/30
[R-sig-phylo] Adding random branches to tree recursively
Juan Antonio Balbuena
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2015/10/30
[R-sig-phylo] To include or not to include spatial autocorrelation co-variables?
Alexandre F. Souza
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2015/10/29
Re: [R-sig-phylo] conflicting results in phylosig() using non-ultrametric and ultrametric tree
Liam J. Revell
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2015/10/29
[R-sig-phylo] conflicting results in phylosig() using non-ultrametric and ultrametric tree
Lilian-Lee Müller-Fischer
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2015/10/28
Re: [R-sig-phylo] branching time to branch length (eg. mcmctree)
David Bapst
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2015/10/28
Re: [R-sig-phylo] branching time to branch length (eg. mcmctree)
Tristan Lefebure
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2015/10/28
Re: [R-sig-phylo] branching time to branch length (eg. mcmctree)
David Bapst
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2015/10/28
Re: [R-sig-phylo] branching time to branch length (eg. mcmctree)
Emmanuel Paradis
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2015/10/28
[R-sig-phylo] branching time to branch length (eg. mcmctree)
Tristan Lefebure
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2015/10/28
Re: [R-sig-phylo] add.species.to.genus with pure birth branch lengths
Jostein Gohli
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2015/10/27
Re: [R-sig-phylo] add.species.to.genus with pure birth branch lengths
Liam J. Revell
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2015/10/27
[R-sig-phylo] add.species.to.genus with pure birth branch lengths
Karla Shikev
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2015/10/26
Re: [R-sig-phylo] TreeBASE Query Issue
Carl Boettiger
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2015/10/26
[R-sig-phylo] TreeBASE Query Issue
Skylar Lobdell
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2015/10/22
Re: [R-sig-phylo] adding scale bar to plots produced using cophyloplot
Julie Lee-Yaw
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2015/10/22
Re: [R-sig-phylo] Pagel's lambda for single trait
Liam J. Revell
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2015/10/22
[R-sig-phylo] Pagel's lambda for single trait
xinxin xue
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2015/10/22
Re: [R-sig-phylo] dist.nodes crashing with big trees
Gustavo Burin Ferreira
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2015/10/22
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Jacob Berv
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2015/10/22
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Santiago Sánchez
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2015/10/21
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Jacob Berv
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2015/10/21
[R-sig-phylo] Q regarding the analysis of ordinal meristic traits such as lamellae number
Mozes Blom
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
David Bapst
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
David Bapst
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
Klaus Schliep
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
Klaus Schliep
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
David Bapst
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
Gustavo Burin Ferreira
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
Klaus Schliep
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2015/10/20
Re: [R-sig-phylo] dist.nodes crashing with big trees
Gustavo Burin Ferreira
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2015/10/19
[R-sig-phylo] Hierarchical partitioning for independent effects while accounting for phylogeny
Megan Bartlett
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2015/10/18
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Jacob Berv
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2015/10/18
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Santiago Sánchez
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2015/10/17
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Liam J. Revell
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2015/10/17
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Jacob Berv
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2015/10/17
Re: [R-sig-phylo] simulate Ne changes on a given phylogeny
Brian O'Meara
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2015/10/17
[R-sig-phylo] simulate Ne changes on a given phylogeny
Jacob Berv
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2015/10/17
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
krzysztofbartoszek
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2015/10/17
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/17
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
krzysztofbartoszek
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2015/10/16
Re: [R-sig-phylo] dist.nodes crashing with big trees
Nick Matzke
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2015/10/16
Re: [R-sig-phylo] dist.nodes crashing with big trees
David Bapst
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2015/10/15
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
sandra goutte
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/14
Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data
Jarrod Hadfield
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2015/10/14
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
sandra goutte
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2015/10/14
Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data
Diederik Strubbe
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2015/10/13
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Liam J. Revell
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2015/10/13
Re: [R-sig-phylo] Question on pCCA (phyl.cca)
Julien Clavel
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2015/10/12
[R-sig-phylo] Question on pCCA (phyl.cca)
sandra goutte
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2015/10/10
Re: [R-sig-phylo] adding scale bar to plots produced using cophyloplot
Liam J. Revell
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2015/10/10
Re: [R-sig-phylo] get mean support and sd for 100s of gene trees - also node match counting gene trees vs reference
Liam J. Revell
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2015/10/10
[R-sig-phylo] get mean support and sd for 100s of gene trees - also node match counting gene trees vs reference
Chris Buddenhagen
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2015/10/06
[R-sig-phylo] adding scale bar to plots produced using cophyloplot
Julie Lee-Yaw
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2015/10/04
Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Emmanuel Paradis
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2015/10/04
Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Yu, Guangchuang
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2015/10/04
Re: [R-sig-phylo] issue in ape's rphylo (and workaround)
Emmanuel Paradis
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2015/10/04
Re: [R-sig-phylo] issue in ape's rphylo (and workaround)
Klaus Schliep
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2015/10/04
Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Klaus Schliep
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2015/10/04
[R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize?
Yu, Guangchuang
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2015/10/04
[R-sig-phylo] issue in ape's rphylo (and workaround)
Nick Matzke
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2015/10/04
[R-sig-phylo] plotting a tree from large matrix
Rufaida Al Breiki
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2015/10/03
[R-sig-phylo] Zero eigenvalues in corHMM
Teofil Nakov
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2015/10/03
Re: [R-sig-phylo] Distance between two species from a
Liam J. Revell
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2015/10/03
Re: [R-sig-phylo] Distance between two species from a
Jonathan Greenberg
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2015/10/02
Re: [R-sig-phylo] Distance between two species from a
Joseph W. Brown
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2015/10/02
Re: [R-sig-phylo] Distance between two species from a
Liam Revell
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2015/10/02
Re: [R-sig-phylo] Distance between two species from a
Liam Revell
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2015/10/02
[R-sig-phylo] Distance between two species from a
Jonathan Greenberg
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2015/09/28
[R-sig-phylo] Hillis & Huelsenbeck 1992 g1 test?
Simon Greenhill
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2015/09/28
[R-sig-phylo] Important update to geomorph
Adams, Dean [EEOBS]
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2015/09/27
[R-sig-phylo] next release of ape
Emmanuel Paradis
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2015/09/23
Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Brian O'Meara
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2015/09/23
Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Emmanuel Paradis
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2015/09/23
[R-sig-phylo] New package: Linarius
Gilles Benjamin Leduc
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2015/09/22
Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Franz Krah
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2015/09/21
[R-sig-phylo] different p-values for K using phylosignal vs. phylosig
Nicole Rafferty
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2015/09/21
[R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny
Fabian Roger
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2015/09/16
[R-sig-phylo] new phylogenetic comparative method for shape data
John Denton
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
David Bapst
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Graeme Lloyd
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Liam J. Revell
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Brian O'Meara
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Matt Pennell
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2015/09/14
Re: [R-sig-phylo] Dollo character using ace/make.simmap
Nicholas Crouch
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2015/09/14
[R-sig-phylo] Dollo character using ace/make.simmap
Graeme Lloyd
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2015/09/13
Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Emmanuel Paradis
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2015/09/12
Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument'
Uwe Menzel
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2015/09/01
Re: [R-sig-phylo] phylo.ANOVA.intra
Julien Clavel
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2015/09/01
[R-sig-phylo] phylo.ANOVA.intra
Bruno Frédérich
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2015/08/31
Re: [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn)
Emmanuel Paradis
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2015/08/31
Re: [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn)
Klaus Schliep
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2015/08/31
[R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn)
Kamila Naxerova
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2015/08/28
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/28
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Upham, Nathan
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Christie Ziegler
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Vojtěch Zeisek
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto
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2015/08/26
Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Vojtěch Zeisek
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2015/08/26
[R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus
Felipe Rossetto