r-sig-phylo

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2016/01/12 [R-sig-phylo] extract parent-child from newick Yampolsky, Lev
2016/01/12 [R-sig-phylo] getBtimes vs. branching.times Yampolsky, Lev
2016/01/11 Re: [R-sig-phylo] Package phytools load failed Rupert Collins
2016/01/11 [R-sig-phylo] NAns in HiSSE Lena Frenzke
2016/01/09 Re: [R-sig-phylo] Package phytools load failed Vojtěch Zeisek
2016/01/09 Re: [R-sig-phylo] Package phytools load failed Klaus Schliep
2016/01/09 Re: [R-sig-phylo] Package phytools load failed Liam J. Revell
2016/01/09 Re: [R-sig-phylo] Package phytools load failed William Gearty
2016/01/09 Re: [R-sig-phylo] Package phytools load failed Donald Miles
2016/01/09 Re: [R-sig-phylo] Package phytools load failed Vojtěch Zeisek
2016/01/09 [R-sig-phylo] Package phytools load failed Gabriela Wofkova
2016/01/06 Re: [R-sig-phylo] Fwd: Error message when running gls with estimated lambda Zenil-Ferguson,Rosana
2016/01/06 [R-sig-phylo] Fwd: Error message when running gls with estimated lambda Antonella Soro
2016/01/06 [R-sig-phylo] thread response spam Hilmar Lapp
2016/01/05 Re: [R-sig-phylo] plot trees distribution Simon Blomberg
2016/01/05 Re: [R-sig-phylo] plot trees distribution Giulio V. Dalla Riva
2016/01/05 Re: [R-sig-phylo] plot trees distribution Liam J. Revell
2016/01/05 Re: [R-sig-phylo] Disagreement between "length" of data and "length" of phylogeny Eduardo Ascarrunz
2016/01/04 [R-sig-phylo] Disagreement between "length" of data and "length" of phylogeny Michael Pauers
2016/01/04 Re: [R-sig-phylo] How to embed a function within a matrix Simon Blomberg
2016/01/04 [R-sig-phylo] How to embed a function within a matrix Alexandre F. Souza
2016/01/01 Re: [R-sig-phylo] Calculating branch lengths on a multiphylo object Michael Pauers
2016/01/01 [R-sig-phylo] Error in .jinit() : Cannot create Java virtual machine (-6) using dismo Agus Camacho
2016/01/01 Re: [R-sig-phylo] Calculating branch lengths on a multiphylo object Klaus Schliep
2015/12/31 [R-sig-phylo] Calculating branch lengths on a multiphylo object Michael Pauers
2015/12/24 [R-sig-phylo] add geoscale to histogram or density plot John Denton
2015/12/21 Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees Ross Mounce
2015/12/21 Re: [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees Mark Holder
2015/12/21 [R-sig-phylo] Computing the maximum agreement subtree for large non-binary trees Ross Mounce
2015/12/18 Re: [R-sig-phylo] Detecting homoplasy Klaus Schliep
2015/12/17 [R-sig-phylo] interpreting PGLS results when lambda>1 Zach Culumber
2015/12/17 [R-sig-phylo] Detecting homoplasy Read, Timothy D
2015/12/17 [R-sig-phylo] Problems with dependency Biostrings Klaus Schliep
2015/12/13 Re: [R-sig-phylo] Bug report in ape::root Emmanuel Paradis
2015/12/13 [R-sig-phylo] Postdoctoral Fellowship available in New Zealand Libby Liggins
2015/12/12 [R-sig-phylo] Bug report in ape::root Liam J. Revell
2015/12/11 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6 Jacob Berv
2015/12/11 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6 Jacob Berv
2015/12/10 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6 David Bapst
2015/12/10 Re: [R-sig-phylo] Plotting sampled-ancestor trees in R David Bapst
2015/12/10 Re: [R-sig-phylo] Implementation of Mir et al.'s (2013) tree balance index krzysztofbartoszek
2015/12/10 Re: [R-sig-phylo] R-sig-phylo Digest, Vol 95, Issue 6 Yu, Guangchuang
2015/12/09 [R-sig-phylo] Implementation of Mir et al.'s (2013) tree balance index? Gabriel Yedid
2015/12/09 Re: [R-sig-phylo] Plotting sampled-ancestor trees in R Roger Close
2015/12/08 [R-sig-phylo] Fwd: Community analysis of average plant trait values with phylogenetic context Benjamin O'Leary
2015/12/08 Re: [R-sig-phylo] Plotting sampled-ancestor trees in R David Bapst
2015/12/08 Re: [R-sig-phylo] Plotting sampled-ancestor trees in R Emmanuel Paradis
2015/12/08 [R-sig-phylo] Plotting sampled-ancestor trees in R Roger Close
2015/12/08 Re: [R-sig-phylo] Fwd: rate units in fitContinuous Karla Shikev
2015/12/08 Re: [R-sig-phylo] Fwd: rate units in fitContinuous Julien Clavel
2015/12/08 [R-sig-phylo] Fwd: rate units in fitContinuous Karla Shikev
2015/12/07 Re: [R-sig-phylo] rate units in fitContinuous Josef C Uyeda
2015/12/07 [R-sig-phylo] rate units in fitContinuous Karla Shikev
2015/12/07 [R-sig-phylo] Medusa analysis on posterior sample of trees Ernesto De Castro
2015/12/06 Re: [R-sig-phylo] BiSSE models on multiphylo objects Daniel Caetano
2015/12/04 [R-sig-phylo] BiSSE models on multiphylo objects Arbuckle, Kevin
2015/11/30 Re: [R-sig-phylo] 3 dimensional ordination of tree distances Jombart, Thibaut
2015/11/30 [R-sig-phylo] 3 dimensional ordination of tree distances Chris Buddenhagen
2015/11/30 Re: [R-sig-phylo] Fitting Brownian evolution with bounds Florian Boucher
2015/11/30 Re: [R-sig-phylo] Fitting Brownian evolution with bounds Brian O'Meara
2015/11/30 [R-sig-phylo] Fitting Brownian evolution with bounds saurabh
2015/11/27 Re: [R-sig-phylo] read tree labels without single quotes Liam J. Revell
2015/11/27 [R-sig-phylo] read tree labels without single quotes Fabian Roger
2015/11/24 Re: [R-sig-phylo] changepoints in speciation-through-time? Simon Joly
2015/11/24 Re: [R-sig-phylo] changepoints in speciation-through-time? Matt Pennell
2015/11/24 [R-sig-phylo] changepoints in speciation-through-time? John Denton
2015/11/18 Re: [R-sig-phylo] next release of ape Emmanuel Paradis
2015/11/17 Re: [R-sig-phylo] Mapping gene gain loss info to rooted species tree Anand K S Rao
2015/11/16 Re: [R-sig-phylo] Mapping gene gain loss info to rooted species tree Anand K S Rao
2015/11/16 Re: [R-sig-phylo] Mapping gene gain loss info to rooted species tree Klaus Schliep
2015/11/16 [R-sig-phylo] Mapping gene gain loss info to rooted species tree Anand K S Rao
2015/11/13 Re: [R-sig-phylo] Error with rerootingMethod in phytools Liam J. Revell
2015/11/12 Re: [R-sig-phylo] Error with rerootingMethod in phytools Liam J. Revell
2015/11/12 [R-sig-phylo] Error with rerootingMethod in phytools Graeme Lloyd
2015/11/12 [R-sig-phylo] diversitree: asr bug, equal-rate model with root constraint Sébastien Lavergne
2015/11/11 [R-sig-phylo] BAMM and BAMMtools package: updated, overhauled Dan Rabosky
2015/11/07 Re: [R-sig-phylo] ASR tree with highlighted state-changes Liam J. Revell
2015/11/06 Re: [R-sig-phylo] ASR tree with highlighted state-changes Todd Oakley
2015/11/06 Re: [R-sig-phylo] ASR tree with highlighted state-changes Richard Harris
2015/11/05 Re: [R-sig-phylo] ASR tree with highlighted state-changes Liam J. Revell
2015/11/05 [R-sig-phylo] ASR tree with highlighted state-changes Richard Harris
2015/11/05 Re: [R-sig-phylo] Plotting ancestral states from estimation on multiphylo object Arbuckle, Kevin
2015/11/04 Re: [R-sig-phylo] Plotting ancestral states from estimation on multiphylo object Liam J. Revell
2015/11/04 [R-sig-phylo] Plotting ancestral states from estimation on multiphylo object Arbuckle, Kevin
2015/11/04 [R-sig-phylo] distance matrix for phylogeny Rufaida Al Breiki
2015/11/04 Re: [R-sig-phylo] Error message when running gls with estimated lambda Emmanuel Paradis
2015/11/03 Re: [R-sig-phylo] add.species.to.genus with pure birth branch lengths Karla Shikev
2015/11/03 [R-sig-phylo] phylogenetic PCA including categorical variables Sereina Graber
2015/11/02 Re: [R-sig-phylo] Error message when running gls with estimated lambda Antonella Soro
2015/11/02 Re: [R-sig-phylo] Adding random branches to tree recursively Juan Antonio Balbuena
2015/11/02 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Rob Lanfear
2015/11/01 Re: [R-sig-phylo] Adding random branches to tree recursively Liam J. Revell
2015/10/30 Re: [R-sig-phylo] Adding random branches to tree recursively Eliot Miller
2015/10/30 Re: [R-sig-phylo] Adding random branches to tree recursively Liam J. Revell
2015/10/30 [R-sig-phylo] Adding random branches to tree recursively Juan Antonio Balbuena
2015/10/30 [R-sig-phylo] To include or not to include spatial autocorrelation co-variables? Alexandre F. Souza
2015/10/29 Re: [R-sig-phylo] conflicting results in phylosig() using non-ultrametric and ultrametric tree Liam J. Revell
2015/10/29 [R-sig-phylo] conflicting results in phylosig() using non-ultrametric and ultrametric tree Lilian-Lee Müller-Fischer
2015/10/28 Re: [R-sig-phylo] branching time to branch length (eg. mcmctree) David Bapst
2015/10/28 Re: [R-sig-phylo] branching time to branch length (eg. mcmctree) Tristan Lefebure
2015/10/28 Re: [R-sig-phylo] branching time to branch length (eg. mcmctree) David Bapst
2015/10/28 Re: [R-sig-phylo] branching time to branch length (eg. mcmctree) Emmanuel Paradis
2015/10/28 [R-sig-phylo] branching time to branch length (eg. mcmctree) Tristan Lefebure
2015/10/28 Re: [R-sig-phylo] add.species.to.genus with pure birth branch lengths Jostein Gohli
2015/10/27 Re: [R-sig-phylo] add.species.to.genus with pure birth branch lengths Liam J. Revell
2015/10/27 [R-sig-phylo] add.species.to.genus with pure birth branch lengths Karla Shikev
2015/10/26 Re: [R-sig-phylo] TreeBASE Query Issue Carl Boettiger
2015/10/26 [R-sig-phylo] TreeBASE Query Issue Skylar Lobdell
2015/10/22 Re: [R-sig-phylo] adding scale bar to plots produced using cophyloplot Julie Lee-Yaw
2015/10/22 Re: [R-sig-phylo] Pagel's lambda for single trait Liam J. Revell
2015/10/22 [R-sig-phylo] Pagel's lambda for single trait xinxin xue
2015/10/22 Re: [R-sig-phylo] dist.nodes crashing with big trees Gustavo Burin Ferreira
2015/10/22 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Jacob Berv
2015/10/22 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Santiago Sánchez
2015/10/21 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Jacob Berv
2015/10/21 [R-sig-phylo] Q regarding the analysis of ordinal meristic traits such as lamellae number Mozes Blom
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees David Bapst
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees David Bapst
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees Klaus Schliep
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees Klaus Schliep
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees David Bapst
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees Gustavo Burin Ferreira
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees Klaus Schliep
2015/10/20 Re: [R-sig-phylo] dist.nodes crashing with big trees Gustavo Burin Ferreira
2015/10/19 [R-sig-phylo] Hierarchical partitioning for independent effects while accounting for phylogeny Megan Bartlett
2015/10/18 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Jacob Berv
2015/10/18 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Santiago Sánchez
2015/10/17 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Liam J. Revell
2015/10/17 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Jacob Berv
2015/10/17 Re: [R-sig-phylo] simulate Ne changes on a given phylogeny Brian O'Meara
2015/10/17 [R-sig-phylo] simulate Ne changes on a given phylogeny Jacob Berv
2015/10/17 Re: [R-sig-phylo] Question on pCCA (phyl.cca) krzysztofbartoszek
2015/10/17 Re: [R-sig-phylo] Question on pCCA (phyl.cca) Julien Clavel
2015/10/17 Re: [R-sig-phylo] Question on pCCA (phyl.cca) krzysztofbartoszek
2015/10/16 Re: [R-sig-phylo] dist.nodes crashing with big trees Nick Matzke
2015/10/16 Re: [R-sig-phylo] dist.nodes crashing with big trees David Bapst
2015/10/15 Re: [R-sig-phylo] Question on pCCA (phyl.cca) Julien Clavel
2015/10/14 Re: [R-sig-phylo] Question on pCCA (phyl.cca) sandra goutte
2015/10/14 Re: [R-sig-phylo] Question on pCCA (phyl.cca) Julien Clavel
2015/10/14 Re: [R-sig-phylo] Question on pCCA (phyl.cca) Julien Clavel
2015/10/14 Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Jarrod Hadfield
2015/10/14 Re: [R-sig-phylo] Question on pCCA (phyl.cca) sandra goutte
2015/10/14 Re: [R-sig-phylo] A perfect storm: phylogenetic trees, random effects and zero-inflated binomial data Diederik Strubbe
2015/10/13 Re: [R-sig-phylo] Question on pCCA (phyl.cca) Liam J. Revell
2015/10/13 Re: [R-sig-phylo] Question on pCCA (phyl.cca) Julien Clavel
2015/10/12 [R-sig-phylo] Question on pCCA (phyl.cca) sandra goutte
2015/10/10 Re: [R-sig-phylo] adding scale bar to plots produced using cophyloplot Liam J. Revell
2015/10/10 Re: [R-sig-phylo] get mean support and sd for 100s of gene trees - also node match counting gene trees vs reference Liam J. Revell
2015/10/10 [R-sig-phylo] get mean support and sd for 100s of gene trees - also node match counting gene trees vs reference Chris Buddenhagen
2015/10/06 [R-sig-phylo] adding scale bar to plots produced using cophyloplot Julie Lee-Yaw
2015/10/04 Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize? Emmanuel Paradis
2015/10/04 Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize? Yu, Guangchuang
2015/10/04 Re: [R-sig-phylo] issue in ape's rphylo (and workaround) Emmanuel Paradis
2015/10/04 Re: [R-sig-phylo] issue in ape's rphylo (and workaround) Klaus Schliep
2015/10/04 Re: [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize? Klaus Schliep
2015/10/04 [R-sig-phylo] output of phangorn::midpoint is not compatible with ape::ladderize? Yu, Guangchuang
2015/10/04 [R-sig-phylo] issue in ape's rphylo (and workaround) Nick Matzke
2015/10/04 [R-sig-phylo] plotting a tree from large matrix Rufaida Al Breiki
2015/10/03 [R-sig-phylo] Zero eigenvalues in corHMM Teofil Nakov
2015/10/03 Re: [R-sig-phylo] Distance between two species from a Liam J. Revell
2015/10/03 Re: [R-sig-phylo] Distance between two species from a Jonathan Greenberg
2015/10/02 Re: [R-sig-phylo] Distance between two species from a Joseph W. Brown
2015/10/02 Re: [R-sig-phylo] Distance between two species from a Liam Revell
2015/10/02 Re: [R-sig-phylo] Distance between two species from a Liam Revell
2015/10/02 [R-sig-phylo] Distance between two species from a Jonathan Greenberg
2015/09/28 [R-sig-phylo] Hillis & Huelsenbeck 1992 g1 test? Simon Greenhill
2015/09/28 [R-sig-phylo] Important update to geomorph Adams, Dean [EEOBS]
2015/09/27 [R-sig-phylo] next release of ape Emmanuel Paradis
2015/09/23 Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny Brian O'Meara
2015/09/23 Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny Emmanuel Paradis
2015/09/23 [R-sig-phylo] New package: Linarius Gilles Benjamin Leduc
2015/09/22 Re: [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny Franz Krah
2015/09/21 [R-sig-phylo] different p-values for K using phylosignal vs. phylosig Nicole Rafferty
2015/09/21 [R-sig-phylo] using chronos() from the ape package for large bacterial phylogeny Fabian Roger
2015/09/16 [R-sig-phylo] new phylogenetic comparative method for shape data John Denton
2015/09/14 Re: [R-sig-phylo] Dollo character using ace/make.simmap David Bapst
2015/09/14 Re: [R-sig-phylo] Dollo character using ace/make.simmap Graeme Lloyd
2015/09/14 Re: [R-sig-phylo] Dollo character using ace/make.simmap Liam J. Revell
2015/09/14 Re: [R-sig-phylo] Dollo character using ace/make.simmap Brian O'Meara
2015/09/14 Re: [R-sig-phylo] Dollo character using ace/make.simmap Matt Pennell
2015/09/14 Re: [R-sig-phylo] Dollo character using ace/make.simmap Nicholas Crouch
2015/09/14 [R-sig-phylo] Dollo character using ace/make.simmap Graeme Lloyd
2015/09/13 Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument' Emmanuel Paradis
2015/09/12 Re: [R-sig-phylo] ape package gives 'Error in FI[i]:LA[i] : NA/NaN argument' Uwe Menzel
2015/09/01 Re: [R-sig-phylo] phylo.ANOVA.intra Julien Clavel
2015/09/01 [R-sig-phylo] phylo.ANOVA.intra Bruno Frédérich
2015/08/31 Re: [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn) Emmanuel Paradis
2015/08/31 Re: [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn) Klaus Schliep
2015/08/31 [R-sig-phylo] Plotting rooted tree with bootstrap values (ape/phangorn) Kamila Naxerova
2015/08/28 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Felipe Rossetto
2015/08/28 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Felipe Rossetto
2015/08/26 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Upham, Nathan
2015/08/26 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Christie Ziegler
2015/08/26 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Felipe Rossetto
2015/08/26 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Vojtěch Zeisek
2015/08/26 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Felipe Rossetto
2015/08/26 Re: [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Vojtěch Zeisek
2015/08/26 [R-sig-phylo] Help-forcing monophyly of outgroups and PP values of consensus Felipe Rossetto
2015/08/25 Re: [R-sig-phylo] Cannot plot above 500 superimposed trees with densiTree (Phangorn) Klaus Schliep
2015/08/24 Re: [R-sig-phylo] R Sig Phylo Question Large Phylogenies Karen Gordon