Hi All,
I would like to create a tool to import data from a sequencer on a networked
share to a users history.
The ideal setup would be that a query can be submitted to a database which
contains all metadata from the sequencer + the path of the sequencer output.
The tool should then show the av
he/he wants to import.
>
>
> And back to your original question: Yes, it is possible to create interactive
> tools. Check out the 'dynamic_options' examples on
>
> https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax
>
>
> Regards, Hans-Rudolf
>
>
Hi all,
Is there still any support out there for sample tracking / data transfers from
sequencer / external services? Or is this part of Galaxy completely
abandoned/deprecated? All the info in the wiki or other sources is at least 5
years old or refers to files and code that isn’t there anymore
Hi all,
I’m trying to develop a tool that lets you select a file on the server. I’m
using the dynamic_options setting to let Galaxy render a dropdown list of
available file.
However, when I try to test the tool in its current form, I get the following
error:
galaxy.web.framework.decorators
errors as well
>
>
> Regards, Hans-Rudolf
>
> I am not sure, whether this
> On 01/26/2016 01:22 PM, Matthias De Smet wrote:
>> Hi all,
>>
>> I’m trying to develop a tool that lets you select a file on the server.
>> I’m using the dynamic_options settin
Hi All,
I’m trying to implement a tool that get a list of options through the
“dynamic_options” tag. I try to filter the options that get returned with
another param, but it doensn’t seem to work.
my tool xml looks like this
from the archive to a data library
test.sh > $log
nde
> geschreven:
>
> Hi Matthias
>
> I don't think you can do that...I would delegate the filtering to the
> 'list_files' function, i.e. by calling:
>
> list_files(archive_source,query)
>
>
> Regards, Hans-Rudolf
>
>
> On 01/27/2016 10:07
t;> geschreven:
>>>
>>> Hi Matthias
>>>
>>> I don't think you can do that...I would delegate the filtering to the
>>> 'list_files' function, i.e. by calling:
>>>
>>> list_files(archive_source,query)
>>>
Hi again
I’m trying to create a tool that interacts with galaxy through the API. For
this, I need to get the users API key (or equivalent) en the domain name of the
Galaxy host.
The purpose of this tool is to get data and put it in a data library, so I
suppose I need to use the API. Or is ther
Hi all,
We were tracking the galaxy master branch on our local server and are looking
to migrate to v16.01.
The galaxy processes are managed bij supervisor as shown here (
https://wiki.galaxyproject.org/Admin/Config/Performance/Scaling).
After updating all dependencies in our venv we tried to r
>
> Hi
>
> I’m trying to put together a tool + dependency package to use umi-tools
> (https://github.com/CGATOxford/UMI-tools) from Galaxy.
> I’m at a loss on how I should organise this.
>
> The package is available from either github or pip. Which one is preferable
> to use? How do I make s
Hi All!
Thanks for chiming in! I’ll give the conda recipe approach a go, this seems to
be the easiest way to go, and the most futureproof!
Thanks!
M
> Message: 1
> Date: Tue, 5 Jul 2016 06:56:00 +
> From: Matthias De Smet
> To: "galaxy-dev@lists.galaxyproject.org"
Hi all,
We’re looking to migrate our Galaxy instance from a VM based solution to a
docker based solution. Therefore, we need to move all our user and reference
data. What is the best possible solution to migrate all data and change the
path of said data in the database?
Thanks!
M
__
Hi All,
We’d like to migrate our Galaxy instance to an Apache Mesos environment. We can
use the Galaxy docker image to run the webserver, but I’m wondering if there is
any support (or support in the works) the schedule jobs on a Mesos cluster. As
far as I’m aware, none of the supported job sche
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