Re: [caret-users] crash of X KDE session

the gdb prompt and send me the output. Are your able to load a surface into Caret5? Have you tried updating your graphics card drivers? John On Dec 5, 2006, at 10:24 AM, marco tettamanti wrote: Hi John, I have downloaded caret5_exe_linux_debug and ran it, but strange things happened... :-| 1)

Re: [caret-users] crash of X KDE session

d core, enter the command "gdb ./caret5 core". At the gdb prompt, enter the command "where" and send me the output. Good Luck. -- John Harwell [EMAIL PROTECTED] 314-362-3467 Department of Anatomy and Neurobiology Washington Universi

Re: [caret-users] crash of X KDE session

so, does it occur if you convert the file to NIfTI and/or AFNI? I'm guessing it will (e.g., suggesting a display issue, rather than a file I/O issue), but it helps to be sure. If you have trouble converting to another file format, then upload the file here, and I'll provide you the converted

Re: [caret-users] crash of X KDE session

other file format, then upload the file here, and I'll provide you the converted version: http://pulvinar.wustl.edu/cgi-bin/upload.cgi On 11/30/2006 04:08 AM, marco tettamanti wrote: Hi John and Donna, I tried both of your methods, but unfortunately none solved my problem... I have tried

Re: [caret-users] crash of X KDE session

rchive.com/caret-users@brainvis.wustl.edu/msg00892.html -- John Harwell [EMAIL PROTECTED] 314-362-3467 Department of Anatomy and Neurobiology Washington University School of Medicine 660 S. Euclid Ave.Box 8108 St. Louis, MO 63110 USA On Nov 29, 2006, at 10:42 AM, marco tettamanti

[caret-users] crash of X KDE session

of my machine: Linux bll4 2.6.11-kanotix-11 #1 Sun May 29 22:32:10 CEST 2005 i686 GNU/Linux Any help would be greatly appreciated! Best, Marco -- Marco Tettamanti, Ph.D. San Raffaele Scientific Institute Facoltà di Psicologia Via Olgettina 58 I-20132 Milano, Italy Tel. ++39-02-26434888 Fax ++

Re: [caret-users] caret on AMD64

install the missing 32-bit libraries with the following commands: yum install libpng.i386 yum install xorg-x11-libs.i386 yum install xorg-x11-Mesa-libGLU.i386 Now everything's running properly. All the best! Marco Marco Tettamanti wrote: */Volkmar Glauche <[EMAIL PROTECTED]>/* wrote

Re: [SPAM] Re: Re: [caret-users] [SPAM] caret on AMD64

b/tls/libnvidia-tls.so.1 >> (0xf776a000) >> libXext.so.6 => not found >> libX11.so.6 => not found >> >> I have tried creating a symolic link to the existing /usr/lib64/ >> libpng12.so.0 both in the /lib and /usr/lib directories, but I &

Re: [SPAM] Re: Re: [caret-users] [SPAM] caret on AMD64

s: export LD_LIBRARY_PATH=/usr/lib64:/usr/lib:/usr/X11R6/lib64/lib Add any other library directories to the path above (delimited by :) that you think might help. On 08/30/2006 08:14 AM, Marco Tettamanti wrote: > Hi Donna! > Upon a fresh login, the output of 'echo $LD_LIBRARY_PATH' is

Re: [SPAM] Re: Re: [caret-users] [SPAM] caret on AMD64

tput below, I still suspect an issue with your LD_LIBRARY_PATH. It could also be that there are too many shared library differences between our Linux build platform and your runtime platform. But let's clarify before reaching that conclusion. On 08/30/2006 07:06 AM, Marco Tettamanti wrote:

[SPAM] Re: Re: [caret-users] [SPAM] caret on AMD64

nd I have tried creating a symolic link to the existing /usr/lib64/libpng12.so.0 both in the /lib and /usr/lib directories, but I still get the same error message. Permissions and file integrity should all be ok. Do you have any other suggestions? Thank you a lot! Marco Marco Tett

[caret-users] [SPAM] caret on AMD64

s my emails are rejected with the following error message: The Symantec Mail Security program : host acuda.wustl.edu[128.252.248.242] said: 550 <[EMAIL PROTECTED]>: Sender address rejected: Blocked (in reply to RCPT TO command) -- Marco Tettamanti, Ph.D. San Raffaele

Re: [caret-users] problems with Map Volumes

edu/cgi-bin/upload.cgi > > You were running Debian Linux, right? > > Donna > > On 06/10/2005 12:16 PM, marco tettamanti wrote: > >Dear authors, > >I am having problems with the "Map Volumes to Surface" utility. I am > > following the very same procedur

[caret-users] problems with Map Volumes

Thank you for your advice! Marco -- Marco Tettamanti, Ph.D. Department of Neuroscience Scientific Institute San Raffaele c/o L.I.T.A. - room 25/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717552 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [caret-users] caret 5.2: Segmentation Error

t; Alternatively, you can write your original full brain volume in unsigned > byte form and input it to Caret. There should be no need to rescale if > the input is byte. > > I think this probably is the problem (relatively easy fix). > > Donna > > On 06/09/2005 02:14 PM

Re: [caret-users] caret 5.2: Segmentation Error

Other potential problems that can cause such problems: > > * AC not set correctly > * Bad peaks > > The best way for me to help is to look at your volume. > > Donna -- Marco Tettamanti, Ph.D. Department of Neuroscience Scientific Institute San Raffaele c/o L.I.T.A. - room 25/5 Via

[caret-users] caret 5.2: Segmentation Error

is working on a different linux distribution (Red Hat I believe) and is experiencing the same problems (I can gether more precise infos if you like). Any hints on what is happening? Thank you a lot for your help. Best wishes, Marco -- Marco Tettamanti, Ph.D. Department of Neuroscience

Re: [caret-users] Map fMRI to Right Hemisphere

Thanks a lot, Donna! > * Load the appropriate .params file for the right hemisphere (i.e., the > one that is named closest to your surface name, or rather the intensity > volume from which it was generated); its filename should appear in your > spec file, but the mapper does not load it automatica

[caret-users] Map fMRI to Right Hemisphere

rence may be due to an asymmetry between the right and the left hemisphere. But I do not see such a big asymmetry, and I just wanted to be sure that there is not something wrong with the way I am using the mapping procedure. Thanks for your help as always! Marco -- Marco Tettamanti Scien

[caret-users] Re: Show Raised Foci

Map a Talairach Focus, the focus is correctly mapped, but the color scales are unavailable (the foci are consequently all shown in black. After clicking on 'Apply' in the 'Map Talairach Focus' window, an error message appears, saying: PROGRAM ERROR: Unable to create GLX visua

[caret-users] Re: Show Raised Foci

t; Hello Marco, > > On Thursday, July 3, 2003, at 04:06 PM, <[EMAIL PROTECTED]> > wrote: > > Dear John, > > thank you very much for your reply. I am still a bit uncertain, > though:> does "foci inside the surface" for you mean that these > foci are &g

Re: [Surefit-users] another error message

em, so I don't know what will happen. But if they fail > badly, you can do "cd $SFHOME/lib/BAK ; mv * .." to get back to the old > ones, which work on non-vfat file systems. > > Donna Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [Surefit-users] another error message

you > until late next week. Tomorrow is a U.S. holiday, and I'll be at > Dartmouth's fMRI workshop Monday-Wednesday of next week. > > Meanwhile, you'll need to run SureFit on a non-vfat/fat32 file system. > > Donna -- Marco Tettamanti Scientific Institute San Raffaele c

[Surefit-users] another error message

crossovers. --- May this be a similar problem related to the vfat filesystem? Thanks a lot for your help, Marco -- Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 ema

Re: [Surefit-users] error messages (vfat and netcdf don't get along)

the library without HAVE_FTRUNCATE defined. I' ll let you know. Thanks again, Marco -- Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [Surefit-users] error messages (vfat and netcdf don't get along)

inc another try on the vfat file system. > > Assuming you also will be using Caret and/or its fMRI mapper, your vfat > file system might also complain about functions using the netcdf > libraries, because they almost certainly were built with HAVE_FTRUNCATE > defined. But Caret u

Re: [Surefit-users] error messages

ometimes hard to reconstruct to which process an > error message was associated. > > Thanks a lot, > Marco -- Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [Surefit-users] error messages

success there, and it would support the > vfat-as-culprit hypothesis. -- Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [Surefit-users] error messages

ScientificPython). I'll look futher > for similar problems with this module. > > Also, I will contact you off-list about debugging alternatives. > > Donna -- Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [Surefit-users] error messages

> > One other test might give us a bit more insight: When you load your > intensity volume in SureFit, are you able to save your settings under > the SureFit: Volume Preparation tab (i.e., write your .params file)? > I'm curious as to whether python can write *any* files -- .m

Re: [Surefit-users] error messages

r.wustl.edu/cgi-bin/upload.cgi > > I'll give Analyze2Minc a shot and hope for more ideas. > > Donna -- Marco Tettamanti Scientific Institute San Raffaele c/o L.I.T.A. - room 24/5 Via Fratelli Cervi 93 I-20090 Segrate (MI) Italy Tel. +39-02-21717548 Fax +39-02-21717558 email: [EMAIL PROTECTED]

Re: [Surefit-users] error messages

> Use 'ls -l' to make sure it is really gone. If it won't remove, we > could have a permissions problem (i.e., SureFit can't overwrite an > existing file of the same name). > > Please let me know what you find trying these commands. > > Donna -- Marco

Re: [Surefit-users] error messages

> > I don't mind admitting that this has happened to me more than once. ;-) > > The reason your bash session fails is that SureFit requires some > environment variables (e.g., SFHOME, and a number of others in that old > release, including LD_LIBRARY_PATH). While your .cshrc file

[Surefit-users] error messages

0 xAChigh: 78 xMedLimit_low: 78 xMedLimit_high: 83 WMThresh = 68.0 Threshold 68.00 ThresholdVolume 68 Thresholded 511162 voxels 23.96... ----- Any idea of what's causing the problems? Any help is greatly appreciated! Sincerely,