Re: [easybuild] Lmod integration - Families

nderbilt.edu<http://www.accre.vanderbilt.edu> -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de> WWW:

[easybuild] Stream for EasyBuild User Meeting

Dear all, For those who couldn't make it, the stream for the EasyBuild User Meeting is available at https://youtu.be/Pjv2UppJANo We will try hard to keep to the schedule<https://indico-jsc.fz-juelich.de/event/30/page/2>. Alan -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercom

Re: [easybuild] building mxnet

IT Operations, IT Services EMBL Heidelberg, Meyerhofstraße 1, 69117, Heidelberg, Germany Room 13-401 -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-j

Re: [easybuild] glibc on RHEL7.3 issues (anyone?)

Whoops, sorry, knee-jerk, didn't read the details. On 26 Jan 2017 9:25 pm, "Joachim Hein" <joachim.h...@math.lu.se> wrote: > Hi Alan, > > Jack is using Intel 15.x. The intel doc you quote is specific in stating > 16.0.3 and 16.0.4. > > Joachim > > On

Re: [easybuild] Stream for EasyBuild User Meeting

www.youtube.com/watch?v=5VcWnVbJIR0 > > See also http://hpcugent.github.io/easybuild/files/EUM17/ for links to > the slides (I'll still need to get my hands on Bart's slides...) > > We hope to clean up the recordings a bit sometime soon, i.e. trimming > start/end, split up into

Re: [easybuild] Re: Question about PETSc EasyBlock

tzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher >> Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), >> Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, >> Prof. Dr. Sebastian M. Schmidt >> -

Re: [easybuild] Stream for EasyBuild User Meeting

t; the slides (I'll still need to get my hands on Bart's slides...) > > We hope to clean up the recordings a bit sometime soon, i.e. trimming > start/end, split up into individual talks. > > > K. > > > Maxime > > On 17-02-08 03:58, Alan O'Cais wrote: > > Dear a

[easybuild] Playlist from 2nd EasyBuild User Meeting

Dear all, I finished editing the videos from the 2nd User Meeting. You can find the full playlist at https://www.youtube.com/playlist?list=PLVA9BuLC1j-yfxp2w-wraAGDCmhjb3o5Y Enjoy! Alan -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH

Re: [easybuild] Python-2.7.12-foss-2016b undefined references

He's using ncurses at dummy level and this does have the split tinfo lib...it was required to fix a build problem for a statically linked Lmod on some systems, see the mentioned PR On 19 Jan 2017 2:39 pm, "Ward Poelmans" > wrote: On 18-01-17 22:16,

Re: [easybuild] Minimal toolchain issue with Python-3.5.2-foss-2016b

Minimal toolchains doesn't take existing modules into account unless asked to with '--use-existing-modules'. It also doesn't include dummy in the search unless told to...which makes me believe it's building ncurses with dummy only because one of the easyconfigs in the dep list has an explicit

Re: [easybuild] LUA modules: whatis statement split up across multiple lines when printed

-- > > Dr. Markus Geimer > > Juelich Supercomputing Centre > > Institute for Advanced Simulation > > Forschungszentrum Juelich GmbH > > 52425 Juelich, Germany > > > > Phone: +49-2461-61-1773 > > Fax:+49-2461-61-6656

Re: [easybuild] EasyBuild conf call (Feb 4th 2014)

h -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de> WWW:http://www

Re: [easybuild] Python and readline

Aufsichtsrats: Werner Baumann Sitz der Gesellschaft: Leverkusen | Amtsgericht Köln, HRB 49895 -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelic

Re: [easybuild] EasyBuild conference call Tue Oct 28th 2014

t on the JSC workshop last week * a lookout to EasyBuild v1.16.0 which will be released in the coming weeks * open floor for questions/problems Suggestions for other topics are welcome. Please let me know (via mail, IRC, IM) if you're planning to attend this conference call. regards, Kenneth

Re: [easybuild] easybuild build problem

n know better bash than english" | sed s/min/mins/ \ | sed 's/better bash/bash better/' # signal detected in a CERN forum -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461

Re: [easybuild] EasyBuild configuration

ct EasyBuild to set these extra env vars? Thanks, Vali -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de> WWW

Re: [easybuild] [POLL/SURVEY] Who's interested in Power7 and BGQ (and who's working on it)

/software/easybuild/modulefiles/all/Core --- ibmurt/1.2.0.0-120321ibmxlc/13.1.0.0-140510 ibmxlf/15.1.0.0-140509 ibmxlsmp/4.1.0.0-140411 ibmxl/2014.12.19 ibmxlcxlf/2015.1.1 ibmxlmass/8.1.0.0-140423 -- Dr. Alan

Re: [easybuild] [mvapich2] error installing new version

ibfmpich.a anymore. Then, I suppose I need to > change the easyblock, since the sanity check is done there, don’t I? > > Danilo > > > > > On 15 Apr 2015, at 10:13, Alan O'Cais <a.oc...@fz-juelich.de> wrote: > > I'm not sure exactly what the situation is with

Re: [easybuild] request for feedback w.r.t. module properties (Lmod-specific feature)

Hey Kenneth, Sorry if I'm a little late to the party... On 14 Apr 2015 10:53, "Kenneth Hoste" > wrote: > > Hi EasyBuilders, > The approach we're currently considering is to support properties indirectly, > i.e. via options --sticky-module,

Re: [easybuild] Advice on shared easybuild install

shared setup and faced similar issues? Thank you in advance if you have any advice. Cheers, Guilherme -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de

Re: [easybuild] 2015b common toolchains

ot least: please refrain from using these 2015b toolchains > in production until the respective pull requests are merged. Until > then, the toolchain definitions may still be tweaked (and probably > will be for foss/2015b w.r.t. the OpenMPI version)! > > > regards, > >

Re: on modules and dynamic linking (was: Re: [easybuild] wget GCC issue)

ot, and users are good at that. I think it's worth having systems that support both of these models. -Todd > >F. > >-- >echo "sysadmin know better bash than english" | sed s/min/mins/ \ > | sed 's/better bash/bash better/' # signal detected in a CERN forum &g

Re: [easybuild] Question about lmod files, and unloading.

at 20:31, Kenneth Hoste <kenneth.ho...@ugent.be> wrote: > Hi Alan, > > On 15/09/15 17:37, Alan O'Cais wrote: > > We already ran into this problem and wrote a new HMNS that takes the > toolchains as the base, see > <https://github.com/hpcugent/easybuild-framework/p

[easybuild] Toolchain hierarchy

ly to avoid conflicts and then not worry about the order of module loads/unload/reload and what impact that will have on users. What do you think? Alan -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fa

Re: [easybuild] Toolchain hierarchy

<kenneth.ho...@ugent.be<mailto:kenneth.ho...@ugent.be>> wrote: > Hi Alan, > > On 02/10/15 12:29, Alan O'Cais wrote: > > Hi all, > > I want to implement the new intel/2015b toolchains at our site because they > fix problems (GMP I'm looking at you) and line up very we

Re: [easybuild] Toolchain hierarchy

family 'FullToolchain': module unload family 'FullToolchain' Is there another approach to this that I'm missing? Alan On 5 October 2015 at 10:53, Alan O'Cais <a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de>> wrote: Hi Kenneth, Bart, Ok, getting more specific to our toolchain-

Re: [easybuild] Toolchain hierarchy

isloaded(child) ) then LmodMessage("Unloading child module ", child) -- This is weird but because I'm in unload mode this has to be load (since the command gets reversed) load(child) end end On 13 October 2015 at 11:50, Alan O'Cais <a.oc...@fz-juelich.de<mailto:a.oc

Re: [easybuild] Using hidden to clean up module list?

kage showing up with `module spider` (though I'm of the opinion that it should unless you specify `--show-hidden`, but I failed to build a successful PR for that). Robert was already thinking about this, he may have a better view on things. regards, Kenneth -- Dr. Alan O'Cais Application

Re: [easybuild] [OT] Easybuild usage among Top500/General Adoption

than the (experimental) Cray support? regards, Kenneth -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de> WWW:

Re: [easybuild] next EasyBuild conf call: Wed Jan 6th 2016, 5pm CET

tions for other topics are welcome, as usual. Please let me know in one way or another if you're planning to attend. More details on the EasyBuild conf calls are available at https://github.com/hpcugent/easybuild/wiki/Conference-calls . regards, Kenneth -- Dr. Alan O'Cais Appli

Re: [easybuild] Creating cross compiler using EasyBuild

eating a GCC cross compiler? More specifically on a BlueGene Q system? Thanks, Tom -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<ma

Re: [easybuild] VTK problem's

LAGS='-O2 -march=native' -DCMAKE_CXX_FLAGS='-O2 -march=native' -DCMAKE_CXX_COMPILER='g++' -DCMAKE_Fortran_COMPILER='gfortran' -DCMAKE_C_FLAGS='- == 2016-01-24 01:53:51,810 runpy.CMakeMake INFO Closing log for application name VTK version 5.10.1 -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forsc

Re: [easybuild] [flex] error installing flex on a clean system

chars): cmd " ./configure --prefix=/opt/prova/software/easybuild/software/flex/2.5.39 " exited with exitcode 1 and output: M4 is needed and is not a dependency in the easyconfig. Did anyone hit this error? Danilo -- Dr. Alan O'Cais Application Support Juelich Supercomputing Ce

Re: [easybuild] PGI compiler: PGI-15.10-GCC-4.9.3-2.25.eb

y licences file (EasyBuild seems only to check for the existence) and modified the module file for what we need. So we can now continue. Using an export LM_LICENSE_FILE=x...@xxx.xxx<mailto:LM_LICENSE_FILE=x...@xxx.xxx> type statement did not make things build. It does for the icc. W

Re: [easybuild] PGI compiler: PGI-15.10-GCC-4.9.3-2.25.eb

In this case we have the line: modtclfooter = 'prepend-path LM_LICENSE_FILE "1...@licsrv11.xxx:1...@licsrv12.xxx"' in our eb file On 11 February 2016 at 12:57, Alan O'Cais <a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de>> wrote: Hi Joachim, We have the same situa

Re: [easybuild] Intel fortran runtime and Python modules

is loaded. I am not sure at which level (Python, numpy or scipy) Fortran and C report is required and which module should be modified. I leave that to the experts to decide. Best wishes Joachim -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juel

Re: [easybuild] Using easybuild to manage different Python toolstacks

33<tel:%2B49%280%29421%20218%2062133> (phone) +49(0)421 218 98 62133<tel:%2B49%280%29421%20218%2098%2062133> (fax) http://www.iup.uni-bremen.de/~hilboll -- Dr. Alan O'Cais Application Support Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone:

Re: [easybuild] Question about builddependencies and pkg-config

I have been through all this...there is a PR request for it from us to use GCCcore to deliver X11,https://github.com/hpcugent/easybuild-easyconfigs/pull/2735/files , though even that is not as comprehensive as the build we have for GCC 5. I think there is a better approach leveraging jhbuild

Re: [easybuild] install a qmake project

Hi Yann, This is not really supported by Qt in a way that EB would like, see https://github.com/hpcugent/easybuild-easyconfigs/issues/2767 for a discussion. Alan On 22 Sep 2016 3:42 p.m., "Yann Sagon" > wrote: Dear users, I wanted to create an

Re: [easybuild] easybuild -devel files for users?

I don't think its so simple, how would you do this for fftw where there are so many different linking options depending on what you want to do? For X11 libs in particular, you don't need to handle it, this is why pkg-config exists (and the pkg-config paths are already baked into EB). On 25 Oct

Re: [easybuild] easybuild -devel files for users?

Maybe I'm misunderstanding but that is pretty much exactly why I 'created' the trivial buildenv easyblock. The users just load the module that gets created and they can simply use $CC and friends in their build processes, making switching toolchains very straightforward. On 22 Oct 2016 4:09

Re: [easybuild] Automatic detection of hidden modules

tion Developer Adjunct Assistant Professor of Chemical and Biomolecular Engineering Advanced Computing Center for Research and Education (ACCRE) Vanderbilt University - Hill Center 201 (615)-875-9137 www.accre.vanderbilt.edu<http://www.accre.vanderbilt.edu> -- Dr. Alan O'Cais E-CAM Software Ma

Re: [easybuild] easybuild -devel files for users?

There's also an easyblock to create a module filled with the environment variables used by a tool chain during the build process, an example use is at https://github.com/hpcugent/easybuild-easyconfigs/tree/master/easybuild/easyconfigs/b/buildenv On 21 Oct 2016 3:10 a.m., "Jack Perdue"

Re: [easybuild] change with EB3 ebfiles_repo files?

a copy of the original of stuff that works in the repo). jack -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.

Re: [easybuild] change with EB3 ebfiles_repo files?

sense to me... stow how it was resolved in the actual >> installation but keep the original in the repo. >> >> I'm curious about the decision too. >> > > Alan: can you try and hunt down why we did it this way? The other way > around indeed makes more sense... > > >

Re: [easybuild] change with EB3 ebfiles_repo files?

On 24 November 2016 at 09:23, Alan O'Cais <a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de>> wrote: This is a side effect of minimal-toolchains (which I think you've started to play with) because the dependencies within the easyconfig are being fiddled with. In the install dir

Re: [easybuild] Error when implementing a custom module naming scheme

mport easybuild.tools.config as config File "/pkg/suse12/software/EasyBuild/2.9.0/lib/python2.7/site-packages/easybuild_framework-2.9.0-py2.7.egg/easybuild/tools/config.py", line 48, in from easybuild.tools.module_naming_scheme import GENERAL_CLASS ImportError: cannot import nam

Re: [easybuild] environment variable for minimal toolchains?

??) http://easybuild.readthedocs.io/en/latest/Manipulating_dependencies.html#using-minimal-toolchains-for-dependencies <https://urldefense.proofpoint.com/v2/url?u=http-3A__easybuild.readthedocs.io_en_latest_Manipulating-5Fdependencies.html-23using-2Dminimal-2Dtoolchains-2Dfor-2Ddependencies=CwMFAg=ODFT-G5SujMiGrKuoJJjVg=yuyoBkmTkIQPbv1BTF9U2

Re: [easybuild] Has anyone created EB files for the Intel 2017 compilers?

". Question: Has anyone created EB files for toolchains with the icc, ifort etc? Thanks, Ole -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-

Re: [easybuild] Cannot compile RELION with EasyBuild 2.8

of "eb --show-config"? regards, Kenneth -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de> WWW:

[easybuild] Gmane is gone...what next?

So it seems Gmane might be forever down (https://lars.ingebrigtsen.no/2016/07/28/the-end-of-gmane/comment-page-1/#comment-13502) so we may need another serrvice, he recommends The Mail Archive -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH

Re: [easybuild] 2nd EasyBuild User Meeting - February 8-10 in Juelich, Germany

ts: MinDir Dr. Karl Eugen Huthmacher > Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), > Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, > Prof. Dr. Sebastian M. Schmidt > ---- > > --

Re: [easybuild] A question on Intel 2017 cluster edition

.tar.gz. Well, actually it should work (but I haven't tried it). We specify the list of components for icc and ifort so even if you use the big tarball, it should just install what is needed. Ward -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Jue

[easybuild] next EasyBuild conf call: Wed Dec 21st (today), 5pm CET

todays limited daylight and any pagan rituals you chose to engage in, Alan -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...

Re: [easybuild] Scalasca update?

e-p > should be a dependency? > > Thanks again > Joachim > > Sent from my nanoPad > > On 19 Dec 2016, at 13:19, Alan O'Cais <a.oc...@fz-juelich.de> wrote: > > Dear Joachim, > > We do have these available within JSC, but we use minimal toolchains and &g

Re: [easybuild] Scalasca update?

uelich GmbH > >>> 52425 Juelich > >>> Sitz der Gesellschaft: Juelich > >>> Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 > >>> Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher > >>> Geschaeftsfuehrung: P

Re: [easybuild] HDF5 build issue with lsf library libbat.so

ss-2016.03/hdf5-1.8.17/c++' > >> > >> make: *** [all-recursive] Error 1 > >> > >> (at > >> easybuild/software/Core/EasyBuild/3.1.1/lib/python2.7/site-packages/e > >> asybuild_framework-3.1.1-py2.7.egg/easybuild/tools/run.py:446 > >> in parse

Re: [easybuild] Lmod integration - Families

corresponding easyconfig where you want this behavior, e.g., in all compiler modules which are the lowest level of the hierarchy and the recursive unloading shouldn't do any harm. Markus -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 5242

Re: [easybuild] LMOD error during sanity check

e of my builds and fails for others. I was running these > builds from Jenkins and it failed so I tried this via command line and > got the same error. Before running any build, in my .bashrc I have the > following. Can you put the logs with --debug on github gists/pastebin? Ward -- Dr. A

[easybuild] Next EasyBuild conf call: Wed April 12th (tomorrow), 5pm CEST

-calls Kind regards, Alan -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213<tel:02461%20615213> Fax: +49 2461 61 6656<tel:02461%20616656> E-mail: a.oc...@fz-juelich.de<mailto:a.oc..

Re: [easybuild] EasyBuild in user mode

t. Obviously if I don’t add an installpath, it will fail since I don’t allow users to write the centrailised location. Is using the systemwide module and extending this privately supported in EB? Best wishes Joachim -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschun

Re: [easybuild] Strategy for hiding modules

Funnily enough, there's a PR for Lmod that suits exactly your use case: https://github.com/TACC/Lmod/pull/248 On 7 Apr 2017 3:05 pm, "Andreas Hilboll" > wrote: Hi all, when I started using EasyBuild, I didn't know about the option to hide

[easybuild]

Suggestions for additional topics are welcome, please let me know if you're planning to attend this conf call. More information about the EasyBuild conference calls is available at https://github.com/hpcugent/easybuild/wiki/Conference-calls Kind regards, Alan -- Dr. Alan O'Cais E-CAM Software

Re: [easybuild] Custom installation procedure

Hi Exequiel, Have you seen cmdcp? That should probably work. https://github.com/hpcugent/easybuild-easyblocks/blob/master/easybuild/easyblocks/generic/cmdcp.py Alan On 21 Apr 2017 3:30 am, "Exequiel Sepúlveda" > wrote: Hi

RE: [easybuild] MODULEPATH issue when supporting intel and intelcuda toolchain concurrently

e > module. They would reside under Core/ > > > > If this is done this way we can see the intelcuda tree while having icc > and ifort loaded since they wouldn’t be loading the intel. In my > environment, I treat all toolchains as family so that I can’t have an > instance where i

Re: [easybuild] binutils dependency with minimal toolchain

ity - Hill Center 201 > www.accre.vanderbilt.edu<http://www.accre.vanderbilt.edu> -- Ake Sandgren, HPC2N, Umea University, S-90187 Umea, Sweden Internet: a...@hpc2n.umu.se<mailto:a...@hpc2n.umu.se> Phone: +46 90 7866134<tel:%2B46%2090%207866134> Fax: +46 90-580 14<tel:%2B46%2

Re: [easybuild] MODULEPATH issue when supporting intel and intelcuda toolchain concurrently

uild/modules/all/Compiler/intel/2017.1.132-GCC-5.2.0 -- impi/2017.1.132 (I,L) Anyone else come across this issue. Shahzeb Siddiqui HPC Linux Engineer B2220-447.2 Groton, CT -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich

Re: [easybuild] MODULEPATH issue when supporting intel and intelcuda toolchain concurrently

). Since our MPI implementations are in a "family" this is very safe. It also has very little side-effects because how CUDA is included is very heterogeneous across packages and typically needs to be implemented by hand anyway. On 2 March 2017 at 16:31, Alan O'Cais <a.oc...@fz-juelich.d

Re: [easybuild] Introducing minimal toolchains & optarch changes in existing tree

I can't comment on the optarch changes but you might consider using '--use-existing-modules' to avoid reinstalling software at the various levels (more than is strictly necessary). On 25 Jul 2017 11:46 am, "Martin" > wrote: Hi, Should I expect

Re: [easybuild] Introducing minimal toolchains & optarch changes in existing tree

I can't comment on the optarch changes but you might consider using '--use-existing-modules' to avoid reinstalling software at the various levels (more than is strictly necessary). On 25 Jul 2017 11:46 am, "Martin" wrote: > Hi, > > Should I expect any trouble when making

Re: [easybuild] Intel toolchain versionsuffix vs. toolchain

This is related to the toolchains hierarchy, you want the compilers at the bottom of the hierarchy which means being built with dummy. Also if you consider compilers as a 'family' in Lmod parlance then you can't have GCC and intel compilers loaded at the same time...hence the evolution of

Re: [easybuild] Create own easy-config for specific library

Hi Satish, I think the documentation should be enough to get you started: http://easybuild.readthedocs.io/en/latest/Writing_easyconfig_files.html Alan On 29 Jun 2017 7:34 am, "Satish Sherikar" > wrote: Hi, I want to add new easy-config for

Re: [easybuild] Migrating to HMNS (was Re: Local user intstallation)

at 10:43 am, Vanzo, Davide <davide.va...@vanderbilt.edu> >> wrote: >> >>> Thank you all for the great suggestions! >>> >>> DV >>> >>> >>> On Jun 27 2017, at 3:14 am, Miguel Dias Costa <migueldiasco...@gmail.com> >>>

Re: [easybuild] IOMKL based on Intel 17.4 and OpenMPI 2.1.1.

gaging here. If that would be appreciated, could I get (pointers to) “beta” or “RC” files for the components of intel/2017b? Best wishes Joachim -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax:

Re: [easybuild] IOMKL based on Intel 17.4 and OpenMPI 2.1.1.

need a develop branch with files from 2 or 3 PRs ( > #4768, #4794 and/or #4618). > > Best wishes >Joachim > > > > > On 18 Aug 2017, at 11:46, Alan O'Cais <a.oc...@fz-juelich.de> wrote: > > These should contain what you are looking for: > https://github

Re: [easybuild] Specifying a bunch of software to be built at once

ender. Thank you. ____ -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de> WWW:http

Re: [easybuild] Download Issue.

syconfigs/i/impi/i/impi/l_mpi_p_5.1.2.150.t") Thank you! Regards, Satish Sherikar -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc

Re: [easybuild] Local user intstallation

ge users to always add a versionsuffix in case they are > rebuilding a package that already exists globally, otherwise which one gets > picked depends on the order of the folders in $MODULEPATH -- echo "sysadmin know better bash than english" | sed s/min/mins/ \ | sed 's/bett

Re: [easybuild] Boost-1.64.0-intel-2017a.eb fails in eb 3.2.1

Wrong PR, should have been https://github.com/boostorg/mpi/pull/39 (that's the one that got merged) but 42 also seems to work as a patch. Alan On 23 May 2017 at 15:13, Kenneth Hoste <kenneth.ho...@ugent.be> wrote: > On 23/05/2017 15:06, Alan O'Cais wrote: > > The relevant (merged

Re: [easybuild] Boost-1.64.0-intel-2017a.eb fails in eb 3.2.1

.@calculquebec.ca<mailto:bart.olde...@calculquebec.ca> Scientific Computing Analyst / Analyste en calcul scientifique McGill HPC Centre / Centre de Calcul Haute Performance de McGill | http://www.hpc.mcgill.ca<http://www.hpc.mcgill.ca/> Calcul Québec | http://www.calculquebec.ca<http://w

Re: [easybuild] Gromacs GLIBCXX_3.4.15 issue

IBCXX_3.4.15' not found But this lib is in my shared directory, and I put LD_LIBRARY_PATH in my .bashrc Could you please help me to identify the problem. I used the same directory for other packages like WRF, Openmpi etc and it is working fine. Thank you very much in advance. Regards, Wahi -- Dr. A

Re: [easybuild] Gromacs GLIBCXX_3.4.15 issue

ibquadmath.so.0 > (0x7fe08e2bc000) > /lib64/ld-linux-x86-64.so.2 (0x003e4300) > > Sorry but I missed that mdrun is not installed with Gromacs, so maybe I > miss how to run it ? > > On 05/31/2017 11:48 AM, Alan O'Cais wrote: > > When you have these modu

Re: [easybuild] Gromacs GLIBCXX_3.4.15 issue

ses exited with non-zero status, > thus causing > the job to be terminated. The first process to do so was: > > Process name: [[6359,1],0] > Exit code:1 > > On 05/31/2017 12:12 PM, Alan O'Cais wrote: > > Here''s the relevant comment: > https://github.com/hpcugent/

Re: [easybuild] docbook2pdf: command not found

n easybuild? If i add "--disable-docs" in configuration script then i will get an error. So want to know how to change the configuration script for the same. I have attached easybuild log and config.log of fontconfig library. -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing

Re: [easybuild] how to specify choices for dependencies?

va Leibniz Universitaet IT Services Leibniz Universitaet Hannover Schlosswender Str. 5 D-30159 Hannover Tel +49 511 762 7919085<tel:%2B49%20511%20762%207919085> http://www.luis.uni-hannover.de -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich

Re: [easybuild] Local user intstallation

7> > www.accre.vanderbilt.edu > > On Jun 27 2017, at 10:43 am, Vanzo, Davide <davide.va...@vanderbilt.edu> > wrote: > >> Thank you all for the great suggestions! >> >> DV >> >> >> On Jun 27 2017, at 3:14 am, Miguel Dias Costa <migu

Re: [easybuild] Problem with sanity check

IONING=1 WITH_DEBUG_INFO=undef $ module av EasyBuild ModuleCmd_Avail.c(211):ERROR:107: 'MODULEPATH' not set $ which -a ./.local/bin/eb ./.local/bin/eb $ ./.local/bin/eb --version This is EasyBuild 3.4.0 (framework: 3.4.0, easyblocks: 3.4.0) on host []. Best, Peleg -- Dr. Alan O'Cais E-CAM

Re: [easybuild] Problem with unit testing (with Tcl)

mod but EnvironmentModulesC, I added the flag --module-syntax=Tcl, but still get the exact same errors. Any ideas what could be wrong here? Peleg -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 24

Re: [easybuild] Problem with unit testing (with Tcl)

EASYBUILD_MODULE_SYNTAX=Tcl On 17 October 2017 at 16:54, Alan O'Cais <a.oc...@fz-juelich.de> wrote: > Sorry, I don't know more than that...maybe try setting another environment > variable: EASYBUILD_MODULES_SYNTAX=Tcl > > On 17 October 2017 at 16:48, Peleg Bar-Sapir <pe

Re: [easybuild] Problem with unit testing (with Tcl)

still occurs. > > On Tue, Oct 17, 2017 at 4:46 PM, Peleg Bar-Sapir <pel...@gmail.com> wrote: > >> Hello Alan, >> >> I did that before running the unittest, of course. >> >> Peleg >> >> On Tue, Oct 17, 2017 at 4:31 PM, Alan O'Cais <a.oc..

Re: [easybuild] Local installation of modules and dependencies

; issue. > > We are using a hierarchial module naming system and when loading e.g. the > foss module it will only add the system path, never my local path > ~/.local/easybuild/modules/all/MPI/GCC/... > So even if it does build the dependencies needed and install them to my > local

Re: [easybuild] xorg-macros error install

err: 'build failed (first 300 chars): cmd "./autogen.sh && ./configure --prefix=/opt/ohpc/pub/libs/easybuild/3.2.1/software/xorg-macros/1.19.0-foss-2016a " exited with exitcode 127 and output:\n/bin/bash: ./autogen.sh: No such file or directory\n') -- Dr. Alan O'Cai

Re: [easybuild] Package build

Dear Clyde, It looks like you could potentially benefit from the use of the '--minimal-toolchains' to EasyBuild. This will by default only build the required version of the software at the lowest availabel level in the current toolchain. In this case, you would still end up with 2 versions:

Re: [easybuild] Completely removing EasyBuild

thon modules). Is there a general way to do so? I couldn't find any relevant info online. Best, Peleg -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de

Re: [easybuild] Local installation of modules and dependencies

at we're looking for? Best regards, Alexi Rivera -- Dr. Alan O'Cais E-CAM Software Manager Juelich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Juelich, Germany Phone: +49 2461 61 5213 Fax: +49 2461 61 6656 E-mail: a.oc...@fz-juelich.de<mailto:a.oc...@fz-juelich.de

Re: [easybuild] Configuration variables in easyconfig

Hi Gizo, Can you give an example of what you mean here? Why would you need to set a specific install location when the module file essentially hides that information away from you anyway (once you start using $PATH and friends the actual directory is irrelevant)? If you really wanted to do

Re: [easybuild] Re: Module naming schemes

because lmod cannot load the M4/1.4.17 module, as it is located in Core/devel subdirectory. Probably some misconfiguration for EB that I currently use, but I couldn't find documentation on use and how to configure then. Any pointers here are appreciated. Thanks in advance. Kind regards, Erik

Re: [easybuild] Re: installing octave

a> <<a rel="nofollow" href="https://josephjohnjj.github.io/">https://josephjohnjj.github.io/</a>>* >>> >>> On Fri, Nov 17, 2017 at 3:45 PM, Mr. Joseph John < >>> jose...@rajagiritech.edu.in> wrote: >>> >>>&g

Re: [easybuild] Re: installing octave

jj.github.io/">https://josephjohnjj.github.io/</a> <<a rel="nofollow" href="https://josephjohnjj.github.io/">https://josephjohnjj.github.io/</a>>* > > On Thu, Nov 16, 2017 at 9:25 PM, Mr. Joseph John < > jose...@rajagiritech.edu.in> wrote: &g

Re: [easybuild] Re: installing octave

ut seeing the logs I am out of guesses. On 17 November 2017 at 14:19, Mr. Joseph John <jose...@rajagiritech.edu.in> wrote: > Yes I am running the eb command from a compute node. I use the interactive > command before I use the eb command. > > > On Friday, November 17, 20

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