[cvs] dists/10.7/stable/main/finkinfo/sci pdb2pqr.info,1.4,1.5

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv24344 Modified Files: pdb2pqr.info Log Message: added missing numpy-py27 dependency Index: pdb2pqr.info

[cvs] dists/10.4/stable/main/finkinfo/sci pdb2pqr.info,1.4,1.5

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv30115 Modified Files: pdb2pqr.info Log Message: added missing dependency on numpy-py27 Index: pdb2pqr.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.info,1.3,1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv8706 Modified Files: coot-pre.info Log Message: we now need --with-enhanced-ligand-tools to build with rdkit Index: coot-pre.info

[cvs] dists/10.4/stable/main/finkinfo/sci coot-pre.info,1.1,1.2

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15356 Modified Files: coot-pre.info Log Message: fix so it builds once again with rdkit Index: coot-pre.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.patch,1.1,NONE

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4065 Removed Files: coot-pre.patch Log Message: patch now obsolete --- coot-pre.patch DELETED ---

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.info,1.2,1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4143 Modified Files: coot-pre.info Log Message: update incorporates previous patch Index: coot-pre.info

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.8,1.9

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31725 Modified Files: rdkit.info Log Message: changed from clang to gcc to get libSLNParse.1.dylib to build Index: rdkit.info

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.5,1.6

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31798 Modified Files: rdkit.info Log Message: build explicitly with gcc to be consistent with change in 10.7 branch Index: rdkit.info

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.7,1.8

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11463 Modified Files: rdkit.info Log Message: added dependency on boost1.53.nopython-shlibs Index: rdkit.info

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.4,1.5

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11659 Modified Files: rdkit.info Log Message: added dependency on boost1.53.nopython-shlibs Index: rdkit.info

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.3,1.4

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv19860 Modified Files: rdkit.info Log Message: revert to previous revision Index: rdkit.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.27, 1.28 coot-pre.info, 1.1, 1.2 refmac.info, 1.2, 1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv15233 Modified Files: coot.info coot-pre.info refmac.info Log Message: fixed cheesy nonrobust symlink hack in coot for refmac monomer lib Index: coot.info

[cvs] dists/10.7/stable/main/finkinfo/sci refmac.info,1.1,1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv32528 Modified Files: refmac.info Log Message: refmac csh script error corrected in profile.d file Index: refmac.info

[cvs] dists/10.7/stable/main/finkinfo/sci clipper.patch, NONE, 1.1 clipper.info, 1.6, 1.7

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11916 Modified Files: clipper.info Added Files: clipper.patch Log Message: clipper bug fix for cif file i/o bug causing coot to seg fault --- NEW FILE:

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.26, 1.27 libccp4.info, 1.2, 1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv14511 Modified Files: coot.info libccp4.info Log Message: added missing srs files to libccp4 and changed coot dependency accordingly Index: libccp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot-pre.info, NONE, 1.1 coot-pre.patch, NONE, 1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv14733 Added Files: coot-pre.info coot-pre.patch Log Message: coot variant to placate those demanding access to the latest features --- NEW FILE: coot-pre.patch ---

[cvs] dists/10.7/stable/main/finkinfo/sci tinker.patch, NONE, 1.1 tinker.info, 1.4, 1.5

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv23783 Modified Files: tinker.info Added Files: tinker.patch Log Message: tinker updates via Jack Howarth --- NEW FILE: tinker.patch --- ---

[cvs] dists/10.7/stable/main/finkinfo/sci pointless.info, NONE, 1.1 pointless.patch, NONE, 1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv18193 Added Files: pointless.info pointless.patch Log Message: another pointless update --- NEW FILE: pointless.patch --- diff -ruN pointless-orig/Makefile

[cvs] dists/10.7/stable/main/finkinfo/sci libccp4.info,1.1,1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4412 Modified Files: libccp4.info Log Message: added missing parameter file Index: libccp4.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci refmac.info, NONE, 1.1 refmac.patch, NONE, 1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4482 Added Files: refmac.info refmac.patch Log Message: reintroduce stand-alone refmac package to augment coot --- NEW FILE: refmac.patch --- diff -ruN

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.25,1.26

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv6921 Modified Files: coot.info Log Message: fixed url and integrated standalone refmac and consolidated monomer library with refmac Index: coot.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.24, 1.25 coot.patch, 1.1, 1.2 clipper.info, 1.5, 1.6 mmdb.info, 1.6, 1.7 ssm.info, 1.5, 1.6

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4957 Modified Files: coot.info coot.patch clipper.info mmdb.info ssm.info Log Message: updates for coot dependencies Index: coot.patch

[cvs] dists/10.7/stable/main/finkinfo/sci xia2.info, NONE, 1.1 cctbx.info, NONE, 1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv864 Added Files: xia2.info cctbx.info Log Message: cctbx reintroduced as dependency for new xia2 package --- NEW FILE: cctbx.info --- Package: cctbx Version:

[cvs] dists/10.7/stable/main/finkinfo/sci libccp4.info,NONE,1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv932 Added Files: libccp4.info Log Message: LGPL ccp4 libs to replace older gpp4 and add in symmetry libs --- NEW FILE: libccp4.info --- Package: libccp4 Version: 6.3.1

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.5,1.6

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13833 Modified Files: rdkit.info Log Message: update and fix Conflicts Index: rdkit.info === RCS file:

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info,1.1,1.2

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv25633 Modified Files: rdkit.info Log Message: version updated to current Index: rdkit.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.6,1.7

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv421 Modified Files: rdkit.info Log Message: added DFLEX_EXECUTABLE:FILEPATH=/usr/bin/flex Index: rdkit.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.22, 1.23 rdkit.info, 1.4, 1.5

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13666 Modified Files: coot.info rdkit.info Log Message: fix rdkit and coot to work with new boost1.53 Index: rdkit.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.23,1.24

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv6368 Modified Files: coot.info Log Message: added rdkit Depends Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.3,1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv5958 Modified Files: rdkit.info Log Message: updated to use boot1.53 Index: rdkit.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.2,1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv3876 Modified Files: rdkit.info Log Message: corrected for compile error when only Xcode compilers are available Index: rdkit.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.21,1.22

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4762 Modified Files: coot.info Log Message: corrected md5sum for refmac_dictionary_v5.41.tar.gz Index: coot.info

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.40,1.41

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4812 Modified Files: coot.info Log Message: corrected md5sum for refmac_dictionary_v5.41.tar.gz Index: coot.info

[cvs] dists/10.4/stable/main/finkinfo/sci clipper.info, 1.10, 1.11 coot.info, 1.39, 1.40 gpp4.info, 1.8, 1.9 ssm.info, 1.7, 1.8

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17344 Modified Files: clipper.info coot.info gpp4.info ssm.info Log Message: update to coot and its dependencies to latest version and gcc4.8 Index: gpp4.info

[cvs] dists/10.4/stable/main/finkinfo/sci mmdb.info,1.8,1.9

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17490 Modified Files: mmdb.info Log Message: update to coot and its dependencies to latest version and gcc4.8 Index: mmdb.info

[cvs] dists/10.4/stable/main/finkinfo/sci pdb2pqr.info,1.3,1.4

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17571 Modified Files: pdb2pqr.info Log Message: update for gcc48 Index: pdb2pqr.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci phaser-mpi.info,1.1,1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv9317 Modified Files: phaser-mpi.info Log Message: phaser update for gcc48 Index: phaser-mpi.info ===

[cvs] dists/10.7/stable/main/finkinfo/sci pdb2pqr.info,1.3,1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv10334 Modified Files: pdb2pqr.info Log Message: pdb2pqr update for gcc48 Index: pdb2pqr.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci tinker.info,1.3,1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11776 Modified Files: tinker.info Log Message: tinker update for gcc48 Index: tinker.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci clipper.info, 1.4, 1.5 coot.info, 1.20, 1.21 gpp4.info, 1.4, 1.5 mmdb.info, 1.4, 1.5 ssm.info, 1.4, 1.5

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13354 Modified Files: clipper.info coot.info gpp4.info mmdb.info ssm.info Log Message: update to coot and its dependencies to latest version and gcc4.8 Index:

[cvs] dists/10.7/stable/main/finkinfo/utils a2ps.info,1.2,1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/utils In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17079 Modified Files: a2ps.info Log Message: BuildDepends fix and elimination of precompiled emacs files Index: a2ps.info

[cvs] dists/10.4/stable/main/finkinfo/utils a2ps.info,1.5,1.6

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/utils In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv17702 Modified Files: a2ps.info Log Message: BuildDepends fix and elimination of precompiled emacs files Index: a2ps.info

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info,1.1,1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv22802 Modified Files: rdkit.info Log Message: rdkit update Index: rdkit.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.19,1.20

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv9755 Modified Files: coot.info Log Message: fixed two env var in wrapper script and updated to latest revision Index: coot.info

[cvs] dists/10.7/stable/main/finkinfo/sci mmdb.info,1.3,1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv28227 Modified Files: mmdb.info Log Message: version update Index: mmdb.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info, 1.11, 1.12 pymol-py.patch, 1.6, 1.7

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv6926 Modified Files: pymol-py.info pymol-py.patch Log Message: fixes for startup problem reported by some users Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/sci apbs.info,1.3,1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv6961 Modified Files: apbs.info Log Message: update to work with latest pymol Index: apbs.info === RCS

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info, 1.20, 1.21 pymol-py.patch, 1.8, 1.9 apbs.info, 1.2, 1.3

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv8691 Modified Files: pymol-py.info pymol-py.patch apbs.info Log Message: fix for startup problem Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/sci viennarna-10.8.info, NONE, 1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv28278 Added Files: viennarna-10.8.info Log Message: didn't know it was missing until I needed it --- NEW FILE: viennarna-10.8.info --- Package: viennarna Version:

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info, 1.10, 1.11 pymol-py.patch, 1.5, 1.6

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20804 Modified Files: pymol-py.info pymol-py.patch Log Message: pymol update from upstream svn changes Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info, 1.19, 1.20 pymol-py.patch, 1.7, 1.8

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv21022 Modified Files: pymol-py.info pymol-py.patch Log Message: pymol update from upstream svn changes Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/sci gromacs-mpi.info, NONE, 1.1 gromacs.patch, NONE, 1.1 gromacs.info, 1.2, 1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv32393 Modified Files: gromacs.info Added Files: gromacs-mpi.info gromacs.patch Log Message: update of gromacs package Index: gromacs.info

[cvs] dists/10.4/stable/main/finkinfo/sci gromacs.patch, NONE, 1.1 gromacs.info, 1.5, 1.6 gromacs-mpi.info, 1.4, 1.5

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4349 Modified Files: gromacs.info gromacs-mpi.info Added Files: gromacs.patch Log Message: update of gromacs package Index: gromacs.info

[cvs] dists/10.7/stable/main/finkinfo/sci rdkit.info, NONE, 1.1 coot.info, 1.18, 1.19

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31318 Modified Files: coot.info Added Files: rdkit.info Log Message: rdkit added as new dependency for coot --- NEW FILE: rdkit.info --- Package: rdkit

[cvs] dists/10.4/stable/main/finkinfo/sci rdkit.info, NONE, 1.1 coot.info, 1.38, 1.39

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv31467 Modified Files: coot.info Added Files: rdkit.info Log Message: rdkit added as new dependency for coot --- NEW FILE: rdkit.info --- Package: rdkit

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info, 1.21, 1.22 ccp4.patch, 1.6, 1.7

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv20575 Modified Files: ccp4.info ccp4.patch Log Message: fixes for 32 bit thanks to Hanspeter Index: ccp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.17,1.18

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv5845 Modified Files: coot.info Log Message: updates upstream Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/languages guile18-gtk.info, 1.4, 1.5

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv27991 Modified Files: guile18-gtk.info Log Message: undo fix that breaks everything. Note to self: never commit to cvs while under influence of pain-killers.

[cvs] dists/10.7/stable/main/finkinfo/languages guile18-gtk.info, 1.3, 1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/languages In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv28496 Modified Files: guile18-gtk.info Log Message: user reports export 'CFLAGS=/usr/X11/include' needed to compile on 10.8 Index: guile18-gtk.info

[cvs] dists/10.7/stable/main/finkinfo/shells zsh.info, 1.1, 1.2 zsh-helpfiles.info, 1.1, 1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/shells In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv25695 Modified Files: zsh.info zsh-helpfiles.info Log Message: updates upstream Index: zsh-helpfiles.info

[cvs] dists/10.7/stable/main/finkinfo/sci xmakemol.info, NONE, 1.1 xmakemol.patch, NONE, 1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv11564 Added Files: xmakemol.info xmakemol.patch Log Message: unmodified. Package is up to date --- NEW FILE: xmakemol.info --- Package: xmakemol Version: 5.16

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.patch, 1.4, 1.5 pymol-py.info, 1.9, 1.10

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv17857 Modified Files: pymol-py.patch pymol-py.info Log Message: work-around for Radeon graphics card incompatibility Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.patch, 1.6, 1.7 pymol-py.info, 1.18, 1.19

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv17957 Modified Files: pymol-py.patch pymol-py.info Log Message: work-around for Radeon graphics card incompatibility Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.37,1.38

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv24518 Modified Files: coot.info Log Message: stable 0.7 release for coot Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.16,1.17

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv8074 Modified Files: coot.info Log Message: new version of coot, finally Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci ccp4.info,1.10,1.11

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv15616 Modified Files: ccp4.info Log Message: fixed another couple of instances of linking the wrong dylib Index: ccp4.info

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info,1.19,1.20

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv15655 Modified Files: ccp4.info Log Message: fixed another couple of instances of linking the wrong dylib Index: ccp4.info

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info,1.20,1.21

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv15705 Modified Files: ccp4.info Log Message: fixed another couple of instances of linking the wrong dylib Index: ccp4.info

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info, 1.18, 1.19 ccp4.patch, 1.5, 1.6

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv27691 Modified Files: ccp4.info ccp4.patch Log Message: sync with 10.7 branch, moves files to /sw/opt to conform to fink policy after 10 years of doing it wrong Index: ccp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci ccp4.info, 1.9, 1.10 ccp4.patch, 1.2, 1.3

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv22082 Modified Files: ccp4.info ccp4.patch Log Message: further fixes and cleanup, moved from /sw/share/xtal to /sw/opt for consistency with fink packaging policy Index: ccp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci eden.info,1.1,1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv22277 Modified Files: eden.info Log Message: cleanup and moved supporting ascii text files from /sw/share/xtal/eden to /sw/share/eden Index: eden.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.15,1.16

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv25600 Modified Files: coot.info Log Message: added dependency missing further down chain Index: coot.info === RCS file:

[cvs] dists/10.4/stable/main/finkinfo/sci phaser-mpi.info,NONE,1.1

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv29802 Added Files: phaser-mpi.info Log Message: standalone version of phaser capable of using mp --- NEW FILE: phaser-mpi.info --- Package: phaser-mpi Version: 2.5.1 Revision: 1

[cvs] dists/10.7/stable/main/finkinfo/sci phaser-mpi.info,NONE,1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv29845 Added Files: phaser-mpi.info Log Message: standalone version of phaser capable of using mp --- NEW FILE: phaser-mpi.info --- Package: phaser-mpi Version: 2.5.1 Revision: 1

[cvs] dists/10.7/stable/main/finkinfo/sci ccp4.info,1.8,1.9

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv1031 Modified Files: ccp4.info Log Message: fix for bp3 seg fault and correct ENV var for BALBES_ROOT Index: ccp4.info ===

[cvs] dists/10.4/stable/main/finkinfo/sci ccp4.info, 1.17, 1.18 ccp4.patch, 1.4, 1.5

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv1584 Modified Files: ccp4.info ccp4.patch Log Message: new version compatible with 10.6 to 10.8 and gcc47 Index: ccp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci ccp4.info, 1.7, 1.8 ccp4.patch, 1.1, 1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv25974 Modified Files: ccp4.info ccp4.patch Log Message: new version compatible with 10.8 and gcc47 Index: ccp4.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.14,1.15

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv16064 Modified Files: coot.info Log Message: coot fix for linking to system python rather than fink python, latest version update Index: coot.info

[cvs] dists/10.7/stable/main/finkinfo/sci tinker.info,1.1,1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv12266 Modified Files: tinker.info Log Message: tinker update and gcc47 dependency Index: tinker.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci gromacs-mpi-10.7.info, 1.1, 1.2 gromacs.info, 1.1, 1.2

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7785 Modified Files: gromacs-mpi-10.7.info gromacs.info Log Message: updated for 10.8 and gcc47 Index: gromacs.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.13,1.14

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv29877 Modified Files: coot.info Log Message: fix packaging error and update for 10.8 compatibility Index: coot.info === RCS

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.12,1.13

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv8030 Modified Files: coot.info Log Message: fixes and update for 10.8 compatibility Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info, 1.10, 1.11 clipper.info, 1.3, 1.4 ssm.info, 1.3, 1.4 mmdb.info, 1.2, 1.3 gpp4.info, 1.3, 1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv12205 Modified Files: coot.info clipper.info ssm.info mmdb.info gpp4.info Log Message: coordinate updates and dependencies on gcc47 Index: gpp4.info

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info, 1.35, 1.36 clipper.info, 1.9, 1.10 ssm.info, 1.6, 1.7 mmdb.info, 1.6, 1.7 gpp4.info, 1.7, 1.8

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv15563 Modified Files: coot.info clipper.info ssm.info mmdb.info gpp4.info Log Message: coordinate updates and dependencies on gcc47 Index: gpp4.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.9,1.10

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv19722 Modified Files: coot.info Log Message: latest revision by request Index: coot.info === RCS file:

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.34,1.35

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv19868 Modified Files: coot.info Log Message: sync with 10.8 branch Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.8,1.9

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv30381 Modified Files: coot.info Log Message: fix for OXT function and package errors Index: coot.info === RCS file:

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.33,1.34

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7190 Modified Files: coot.info Log Message: fixed OTX problem and packaging errors Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info,1.8,1.9

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv30239 Modified Files: pymol-py.info Log Message: keep this from looking for apbs in macports directory Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info,1.17,1.18

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv30276 Modified Files: pymol-py.info Log Message: keep this from looking for apbs in macports directory Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/utils a2ps.info,NONE,1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/utils In directory vz-cvs-3.sog:/tmp/cvs-serv32540 Added Files: a2ps.info Log Message: update version and fix for 10.7 --- NEW FILE: a2ps.info --- Package: a2ps Version: 4.14 Revision: 1 Source:

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.7,1.8

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv17871 Modified Files: coot.info Log Message: coot add ldap dependencies and version bump and eliminate multithread install Index: coot.info

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info,1.5,1.6

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7791 Modified Files: pymol-py.info Log Message: fixes for linking GLEW and freetype219 dependency added Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info,1.14,1.15

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv7815 Modified Files: pymol-py.info Log Message: fixes for linking GLEW and freetype219 dependency added Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/sci pymol-py.info, 1.7, 1.8 pymol-py.patch, 1.3, 1.4

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv26426 Modified Files: pymol-py.info pymol-py.patch Log Message: further fixes to patch file requiring version bump Index: pymol-py.info

[cvs] dists/10.4/stable/main/finkinfo/sci pymol-py.info, 1.16, 1.17 pymol-py.patch, 1.5, 1.6

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv27948 Modified Files: pymol-py.info pymol-py.patch Log Message: further fixes to patch file requiring version bump Index: pymol-py.info

[cvs] dists/10.7/stable/main/finkinfo/sci coot.info,1.6,1.7

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv12012 Modified Files: coot.info Log Message: coot update to fix LIDIA Index: coot.info === RCS file:

[cvs] dists/10.4/stable/main/finkinfo/sci coot.info,1.31,1.32

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv12185 Modified Files: coot.info Log Message: coot update and fix for LIDIA Index: coot.info === RCS file:

[cvs] dists/10.7/stable/main/finkinfo/sci rnabob.info,NONE,1.1

Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv9876 Added Files: rnabob.info Log Message: version update and compile fix --- NEW FILE: rnabob.info --- Package: rnabob Version: 2.2 Revision: 1 Source:

[cvs] dists/10.4/stable/main/finkinfo/sci rnabob.info,NONE,1.1

Update of /cvsroot/fink/dists/10.4/stable/main/finkinfo/sci In directory vz-cvs-3.sog:/tmp/cvs-serv10074 Added Files: rnabob.info Log Message: version update and compile fix --- NEW FILE: rnabob.info --- Package: rnabob Version: 2.2 Revision: 1 Source:

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