[Fink-users] arts failling because of missing zlib for python in Fink

, 'import zlib' fails). I would thank you very much if anyone could give any hint in this topic. Cheers, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

Re: [Fink-users] arts failling because of missing zlib for python in Fink

Thanks Martin, In my installation appears /sw/lib/python2.4/lib-dynload/zlib_failed.so I just link my working mac python zlib.so there and now it's working. Thanks again. Cheers, Alan On 28/12/06, Martin Costabel [EMAIL PROTECTED] wrote: Alan wrote: Dears, I use Mac OSX 10.4.8 Intel

[Fink-users] uname -m = x86_64 ?

Hi There! Is there any Mac OSX Leopard out there that would return x86_64 for uname -m? I want to build packages with x86_64 (64 bits) but unless I touch *.info files in Fink it won't happen since in my computer (new MBP) I get: uname -m : i386 Cheers, Alan -- Alan Wilter S. da Silva, D.Sc

[Fink-users] to create python26 with arch x86_64

/python2.6 -rw-r--r-- 1 root admin 6712224 2009-07-17 10:13 /sw/lib/python2.6/config/libpython2.6.a Any comment would be really appreciate, many thanks in advance. Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court

[Fink-users] make -j n

Hi List, I was wondering if would be possible to make Fink aware of a multicores system and then use make -j n for speedup compilation. Sometimes I modified the _program_.info file in order to do that, but is it possible to do that for the whole system? Cheers, Alan -- Alan Wilter S. da Silva

[Fink-users] fink x86_64 failed for python26

installed.) Removing fink-buildlock-python26-2.6.2-2 ... Failed: phase compiling: python26-2.6.2-2 failed Any help appreciated, many thanks in advance, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road

[Fink-users] dbus in 64 bits

. exit 1 fi You must install the 'passwd' package for D-Bus to build properly. [snip] Running id -u messagebus: id: messagebus: No such user So, I believe that I have to create this user, but how to do it safely? Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate

[Fink-users] povray for fink 64 bits failing

' for more details. [snip] Any idea of how to solve this issue? Many thanks in advance. Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] a fix for boost-jam.info for fink 64 bits

I added x86_64) machine=x86_64;; in /sw/fink/10.4/unstable/main/finkinfo/devel/boost-jam.info See attached file. Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http

[Fink-users] scipy-py26 x86_64 from Fink

Hi List, scipy-py26 x86_64 from Fink. Scipy-py26 worked for me, but I have to do this: # modify /sw/fink/10.4/unstable/main/finkinfo/sci/scipy-py.info: gcc43 - gcc44 fink install scipy-py26 Cheers, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry

[Fink-users] failed to install apbs

in advance, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28 -- Let Crystal

Re: [Fink-users] failed to install apbs

in advance. Alan On Fri, Jul 31, 2009 at 19:35, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 William Scott wrote: There's something funny going on in the install script. For one thing, it's installing files in /sw/src/fink.build

Re: [Fink-users] failed to install apbs

will not have such a problem as you saw by yourself. I will test something here... Cheers, Alan On Sat, Aug 1, 2009 at 15:33, Alexander Hansen alexanderk.han...@gmail.comwrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Alan wrote: Hi there, Well, I found this: find /sw/src

Re: [Fink-users] failed to install apbs

. Scott Contact info: http://chemistry.ucsc.edu/~wgscott/ -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

Re: [Fink-users] failed to install apbs

And I know why: where just 'cp' replace with '/bin/cp'. I guess I had problem because I use package 'coreutils' Many thansk William! Cheers, Alan On Sun, Aug 2, 2009 at 12:13, Alan alanwil...@gmail.com wrote: Really sorry, but it didn't work for me... even after a fresh install. # # make

[Fink-users] failed for boost-jam in fink x86_64

. Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28 -- Let Crystal Reports

[Fink-users] rasmol md5 seems broken

Actual: MD5(2f43c606775248398dc71ce559b35245) SHA1(0e307d7a789d4cd201862c317b21d5d7e67730cf) Downloading the file RasMol_2.7.5.tar.gz failed. (1) Give up (2) Retry the same mirror Failed: file download failed for RasMol_2.7.5.tar.gz of package rasmol-2.7.5-1 Maintainer cc'ed. Alan -- Alan

[Fink-users] transfig for fink 64bits

i386 Cheers, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28 -- Let

[Fink-users] openmpi with xgrid

XGrid components must be built as DSOs. means and if it would be possible to get openmpi with xgrid support? Thanks, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http

Re: [Fink-users] openmpi with xgrid

I believe you're right because I saw some reference to that elsewhere. I will carry some tests here. Thanks. Alan On Thu, Aug 13, 2009 at 14:18, Jack Howarth howa...@bromo.med.uc.eduwrote: The failure to build the Xgrid support appears to be related to its incompatibility with the -enable

Re: [Fink-users] openmpi with xgrid

I was about to do a similar question and here it goes: Why actually openmpi in Fink is compiled with static? Alan On Thu, Aug 13, 2009 at 16:16, Daniel Macks dma...@netspace.org wrote: On Thu, Aug 13, 2009 at 09:18:30AM -0400, Jack Howarth wrote: The failure to build the Xgrid support

[Fink-users] testing apbs-mpi-openmpi

? Cheers, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28 -- Let Crystal Reports

Re: [Fink-users] testing apbs-mpi

and I didn't get it to work with Fink openmpi libs. Any help here would be very appreciated. Cheers, Alan On Thu, Aug 13, 2009 at 17:22, Alan alanwil...@gmail.com wrote: Hi There, So I installed apbs-mpi-openmpi and it seems to work fine but when trying this link to run in multi-core machine

Re: [Fink-users] openmpi with xgrid

or need this functionality but having a 'openmpi-xgrid' option in fink would be plus (at least for me). Cheers, Alan On Thu, Aug 13, 2009 at 14:18, Jack Howarth howa...@bromo.med.uc.eduwrote: The failure to build the Xgrid support appears to be related to its incompatibility with the -enable

Re: [Fink-users] testing apbs-mpi

Still, is it possible to make openmpi with a handle for xgrid? It should be as simple as openmpi-static and openmpi-shared. Of course that it's not urgent since xgrid support is broken in openmpi 1.3.x series so far. Cheers, Alan On Sat, Aug 15, 2009 at 18:35, Daniel Macks dma...@netspace.org

Re: [Fink-users] testing apbs-mpi

Thanks Jack, I am using you files anyway. Excellent job. Alan On Sat, Aug 15, 2009 at 03:47, Jack Howarth howa...@bromo.med.uc.eduwrote: Alan, I have uploaded a first pass of new apbs-mpi packaging which builds apbs properly against openmpi. It probably still needs work to make compatible

Re: [Fink-users] testing apbs-mpi

I think it's fixed at least with openmpi since apbs-mpi is working as expected AFAIK. Cheers, Alan On Mon, Aug 17, 2009 at 03:57, William G. Scott wgsc...@chemistry.ucsc.eduwrote: Hi Alan: Sorry, I was away in the most inaccessible part of Utah I could find. I think Jack Howarth fixed

Re: [Fink-users] testing apbs-mpi

programmes like mdrun_mpi from gromacs) this is likely not simple. Cheers, Alan On Mon, Aug 17, 2009 at 07:57, Alan alanwil...@gmail.com wrote: I think it's fixed at least with openmpi since apbs-mpi is working as expected AFAIK. Cheers, Alan On Mon, Aug 17, 2009 at 03:57, William G. Scott

[Fink-users] Fwd: Fink for me (10.6.1, XQuartz, 32 bit)

BTW, I am about to upgrade to SN 10.6 and I use xquartz 2.4.0. What should I do? Remove xquartz 2.4.0 or hope SN will do it for me? Many thanks, Alan On Mon, Sep 14, 2009 at 14:52, David Reiser dbrei...@earthlink.net wrote: On Sep 14, 2009, at 6:34 AM, monipol wrote: I'm not sure

[Fink-users] openmotif4 to replace openmotif3

that the maintainer updated it for unstable. Molmol is working fine for me. Cheers, Alan -- Come build with us! The BlackBerryreg; Developer Conference in SF, CA is the only developer event you need to attend this year. Jumpstart

[Fink-users] FEtk for Fink

Hi there, Can someone tell me if FEtk will be included in Fink? http://www.fetk.org/ I know that at least APBS may do use of it. Many thanks in advance. Alan -- Come build with us! The BlackBerryreg; Developer

[Fink-users] qtpfsgui-mac failed in SL 10.6.2 with Fink

-buildlock-qtpfsgui-mac-1.9.3-1002 (Reading database ... 142763 files and directories currently installed.) Removing fink-buildlock-qtpfsgui-mac-1.9.3-1002 ... Failed: phase compiling: qtpfsgui-mac-1.9.3-1002 failed Many thanks in advance, Alan -- Alan Wilter Sousa da Silva, D.Sc. PDBe group, PiMS

[Fink-users] updating openbabel to from 2.0.2 to 2.2.3

Hi Justin, Is there any chance to get openbabel updated in Fink to version 2.2.3? Many thanks in advance, Alan -- Alan Wilter Sousa da Silva, D.Sc. PDBe group, PiMS project http://www.pims-lims.org/ EMBL - EBI, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK +44 (0)1223 492 583

Re: [Fink-users] qtpfsgui-mac failed in SL 10.6.2 with Fink

-qtpfsgui-mac-1.9.3-1002 (Reading database ... 149186 files and directories currently installed.) Removing fink-buildlock-qtpfsgui-mac-1.9.3-1002 ... Failed: phase compiling: qtpfsgui-mac-1.9.3-1002 failed [snip] Many thanks in advance, Alan On Wed, Dec 9, 2009 at 17:59, Alexander Hansen

[Fink-users] gfortran failing to link with C code

gcc_select? Any help helps, thanks a lot in advance, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] /sw/bin/mpicc is linking to /usr/bin/gcc and not /sw/bin/gcc-4

: posix gcc version 4.4.2 (GCC) So my program failed to link 'mpicc ... -lgfortran ...'. Is it a correct behaviour? I don't think so. How to solve this issue? I am using Fink 64 cvs on SL 10.6.3. Thanks, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry

Re: [Fink-users] /sw/bin/mpicc is linking to /usr/bin/gcc and not /sw/bin/gcc-4

Developer Tools dpkg -S /sw/bin/mpif77 openmpi-dev: /sw/bin/mpif77 I hope it may help you to help me. Thanks, Alan On Thu, Apr 29, 2010 at 14:17, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 4/29/10 8:11 AM, Alan wrote: Hi

Re: [Fink-users] /sw/bin/mpicc is linking to /usr/bin/gcc and not /sw/bin/gcc-4

, however, so I don't really have a way to test it. I second this. Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] issue with numpy-py26 1.3.0-7

Hi there, Developing our application here, based on python, and we start to see this error: ValueError: can't handle version -1 of numpy.dtype pickle My partner uses MacPorts and solved this issue by updating numpy to 1.4. I was wondering if numpy 1.4 for Fink is on the way. Thanks, Alan

Re: [Fink-users] issue with numpy-py26 1.3.0-7

Thanks a lot Derek. Everything looks fine and my applications is running 100% OK. So definitely numpy 1.4.1 solved my problems. Alan On Thu, May 13, 2010 at 20:58, Derek Homeier de...@astro.physik.uni-goettingen.de wrote: Hi, Developing our application here, based on python, and we start

[Fink-users] gcc45-4.5.0-1001 and openmpi-1.4.1-1000

Dear all, Is there a tentative date for releasing openmpi-1.4.1 and gcc45 at least on CVS? Thanks Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] failed to install pyobjc-py26

line option -Wno-long-double error: command 'gcc' failed with exit status 1 Mac OSX 10.6.3 Package manager version: 0.29.10 Distribution version: selfupdate-cvs Mon May 17 14:30:16 2010, 10.6, x86_64 Thanks Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department

Re: [Fink-users] failed to install pyobjc-py26

with exit status 1 I hope you can help me. Alan On Mon, May 17, 2010 at 20:23, Alexander Hansen alexanderk.han...@gmail.com wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 On 5/17/10 3:09 PM, Alan wrote: Thanks Alexander, you're question was the first thing I checked which gcc

[Fink-users] mpich2

Hi there, Have we ever had mpich for Fink? Thanks, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] about updating to python 2.7

it would work as guide for me to update to python 2.7? Many thanks, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] fink update failed because of gdal-shlibs

is it and why I need it. Many thanks in advance, Alan -- Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate Department of Biochemistry, University of Cambridge. 80 Tennis Court Road, Cambridge CB2 1GA, UK. http://www.bio.cam.ac.uk/~awd28

[Fink-users] Gromacs again

: local/main stable/main local/injected Xcode.app: 4.6 Xcode command-line tools: 4.5.0.0.1.1249367152 Max. Fink build jobs: 4 -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt - PANDA, EMBL-EBI CB10 1SD, Hinxton, Cambridge, UK +44 1223 49 4588

Re: [Fink-users] Gromacs again

Well spotted Jack. Indeed, I thought I had disabled cuda when I moved to iMac, but it was still in my $PATH. However, it only worked after I had deleted /usr/local/cuda. Thanks, Alan On 4 March 2013 15:05, Jack Howarth howa...@bromo.med.uc.edu wrote: On Mon, Mar 04, 2013 at 07:59:03AM -0700

[Fink-users] Fink and cx_Oracle

thanks in advance, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt - PANDA, EMBL-EBI CB10 1SD, Hinxton, Cambridge, UK +44 1223 49 4588 -- This SF.net email is sponsored by Windows: Build for Windows Store

Re: [Fink-users] Fink and cx_Oracle

Thanks for your suggestion. Indeed, I tried but didn't work. I am wondering if there's anyone in Fink list that uses Fink python 64 bits and cx_Oracle. Alan On 2 July 2013 18:50, Alexander Hansen alexanderk.han...@gmail.com wrote: On 7/1/13 7:01 AM, Alan wrote: Hi there, I am trying

Re: [Fink-users] fink with Xcode 5

had, but now apparently I have to pay $99? Can someone elaborate here please? Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United

[Fink-users] fink install rpy2-py27 ?

Failed: no package found for specification 'rpy2-py27'! Using Package manager version: 0.35.2 Distribution version: selfupdate-rsync Thu Oct 10 14:00:42 2013, 10.8, x86_64 Trees: local/main stable/main local/injected Thanks in advance, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician

Re: [Fink-users] fink install rpy2-py27 ?

Thanks a lot, it did work, but I have to copy rpy2-py.patch as well. Cheers, Alan On 11 October 2013 18:28, Hanspeter Niederstrasser f...@snaggledworks.comwrote: On 10/11/2013 10:02 AM, Alan wrote: Failed: no package found for specification 'rpy2-py27'! Using Package manager version

[Fink-users] Which X11 with Mavericks?

Hi, I am in process to install Fink 0.36 and then I screen popup asking me to install X11 from Xquartz. Then a link take me to http://xquartz.macosforge.org/landing/ But I don’t see maverick option there. What should I do please? Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc

Re: [Fink-users] Failed: phase installing: test-deep-pm5162-0.112-1failed

Thanks a lot, it’s all fine now. Alan On 21 January 2014 13:58, Daniel Macks dma...@netspace.org wrote: On Tue, 21 Jan 2014 12:47:03 +, Alan alanwil...@gmail.com wrote: Installing /sw/src/fink.build/root-test-deep-pm5162-0.112-1/sw/share/ man/man3/Test::Deep::NoTest.3pm Appending

[Fink-users] Can’t install rpy2

: selfupdate-rsync Wed Feb 12 10:15:25 2014, 10.9, x86_64 Trees: local/main stable/main No recognized Xcode.app installed Xcode command-line tools: 5.0.1.0.1.1382131676 Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European

Re: [Fink-users] Can’t install rpy2

/Frameworks/R.framework/Versions/2.15/Resources --- %p/bin/python%type_raw[python] setup.py build --r-home=%p/Library/Frameworks/R.framework/Versions/3.0/Resources and don’t forget rpy2-py.patch. Alan On 12 February 2014 19:49, Hanspeter Niederstrasser f...@snaggledworks.comwrote: On 2/12/2014 5

[Fink-users] Issue with xcode

: 0.36.4.1 Distribution version: selfupdate-rsync Mon Jun 2 15:08:51 2014, 10.9, x86_64 Trees: local/main stable/main Thanks Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome

Re: [Fink-users] Issue with xcode

Many thanks! (bin enabled) Alan On 2 June 2014 15:49, Alexander Hansen alexanderk.han...@gmail.com wrote: On 6/2/14, 7:15 AM, Alan wrote: Hi I have only the “xcode command line” installed. How do I sort the issue below? Information about 9742 packages read in 1 seconds. Can't resolve

Re: [Fink-users] Issue with xcode

Jul 2 19:08:46 2014, 10.9, x86_64 Trees: local/main stable/main And now I have fink bin diet enabled. Thanks, Alan On 2 June 2014 16:09, Alan alanwil...@gmail.com wrote: Many thanks! (bin enabled) Alan On 2 June 2014 15:49, Alexander Hansen alexanderk.han...@gmail.com wrote: On 6/2/14

[Fink-users] aria2c missing lib

. Package manager version: 0.37.0 Distribution version: selfupdate-rsync Wed Jul 9 13:36:10 2014, 10.9, x86_64 Trees: local/main stable/main -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust

[Fink-users] where’s /sw/bin/ls ?

I finally had to upgrade to Yosemite, did a clean Fink install (all fine), but alas, I have now idea which package installs /sw/bin/ls. Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory

[Fink-users] xcode issue with fink?

, 10.10, x86_64 Trees: local/main stable/main stable/crypto Mac OS X 10.10.3 Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United

Re: [Fink-users] xcode issue with fink?

Thanks Alexander and Haspeter! Now, I could live without qt5, but apparently matplotlib depends on it now. Oh well, so I have to install the whole xcode just for MPL… Alan On 10 June 2015 at 12:36, Hanspeter Niederstrasser f...@snaggledworks.com wrote: On 6/10/2015 6:14 AM, Alan wrote

[Fink-users] x11 issue with fink?

(xorg-server 1.15.2) xcode-select version 2339. fink -V Package manager version: 0.38.5 Distribution version: selfupdate-rsync Wed Jun 10 12:11:30 2015, 10.10, x86_64 Trees: local/main stable/main stable/crypto Mac OS X 10.10.3 Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Bioinformatician

Re: [Fink-users] x11 issue with fink?

Thanks Alexander, it worked as you said. Alan On 10 June 2015 at 12:36, Alexander Hansen alexanderk.han...@gmail.com wrote: On Jun 10, 2015, at 04:30, Alan alanwil...@gmail.com wrote: Trying to update my fink in another Mac that has full xcode.app installed and I found this: Information

[Fink-users] Xcode 7.1

I got this message after updating to Xcode 7.1: WARNING: Xcode.app version (7.1) and Xcode Command Line Tools version (7.0) I can’t find a way of updating command line. Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Senior Bioinformatician, UniProt European Bioinformatics Institute (EMBL

Re: [Fink-users] Xcode 7.1

I have 10.11 (not 10.11.1 yet). I will wait my fink finishes updating (taking ages as it has to compile from source) and then I will do the upgrade to 10.11.1 and again fink update. In another iMac, where everything is updated, I didn’t have this issue. Thanks, Alan On 22 October 2015 at 13:40

Re: [Fink-users] command line tools in El Capitan

Use App Store, search Xcode. Download it. Then start Xcode app, accept the T Cmd lines should be installed. I am afraid one cannot use Fink anymore without full Xcode installation. Alan On 2 October 2015 at 16:47, PNM <p...@minoofar.com> wrote: > I get this error from xcodebuild: >

[Fink-users] I need npm, which fink package to install?

I see several node... Which one would contain npm? Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Senior Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom Tel

Re: [Fink-users] I need npm, which fink package to install?

Thanks Alexander, So no 'npm' in Fink, right? On 20 July 2016 at 17:41, Alexander Hansen <alexanderk.han...@gmail.com> wrote: > > > On Jul 20, 2016, at 07:57, Alan <alanwil...@gmail.com> wrote: > > > > I see several node... > > > > Which one wo

Re: [Fink-users] I need npm, which fink package to install?

Thanks Alexander On 20 July 2016 at 17:46, Alexander Hansen <alexanderk.han...@gmail.com> wrote: > > > > On Jul 20, 2016, at 08:44, Alan <alanwil...@gmail.com> wrote: > > > > Thanks Alexander, > > > > So no 'npm' in Fink, right? > &

[Fink-users] Got a suspicious phishing email

fraudulent activities. Best, (C) 2017 Mail. All rights reserved. NMLSR ID 399801 -- The '*Click here*' link raised a warning in my Gmail account and Antivirus detector. Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Senior Bioinformatician, UniProt European Bioinformatics

Re: [Fink-users] Error in installing guile20

Well, I gave a try, I copied from stable to local and appended /sw/fink/dists/local/main/finkinfo/languages/guile20.patch with lines from https://gist.github.com/rahulg/ baa500e84136f0965e9ade2fb36b90ba but, alas, it didn't work. Alan On 30 September 2016 at 09:18, Alan <alanwil...@gmail.

Re: [Fink-users] Error in installing guile20

Hi there, Same problem here. I know Fink has ways of patching files ... if pointed how to do this, I can give a try. Thanks, Alan On 29 September 2016 at 16:41, Joakim Kjellsson <joakim.kjells...@gmail.com> wrote: > Hi > > I’ve been trying to install ffmpeg via fink, which r

Re: [Fink-users] About libmagic

Many thanks! I thought apt-cache search would work too. But great to know about the site. Alan On 5 October 2016 at 00:53, Alexander Hansen <alexanderk.han...@gmail.com> wrote: > > > On Oct 4, 2016, at 15:55, Alan <alanwil...@gmail.com> wrote: > > > > I am won

[Fink-users] About libmagic

I am wondering if it ever existed in Fink. I need libmagic.so and magic.h. Using Mac Sierra and latest Fink. Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Senior Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust

[Fink-users] Fink upgrade for Sierra

: can't install package fink-0.39.5-101 Is there a remedy or should I install Fink from scratch again? Many thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Senior Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome

[Fink-users] Where to find fink_0.41.0-101_darwin-x86_64.deb ?

Trying to follow http://www.finkproject.org/download/10.12-upgrade.php?phpLang=en Thanks, Alan -- Alan Wilter SOUSA da SILVA, DSc Senior Bioinformatician, UniProt European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory Wellcome Trust Genome Campus Hinxton Cambridge

Re: [Fink-users] Error in installing guile20

Thanks for the explanation! Alan On 3 October 2016 at 18:23, Derek Homeier < de...@astro.physik.uni-goettingen.de> wrote: > Hi Alan, > > On 2 Oct 2016, at 9:03 pm, Alan <alanwil...@gmail.com> wrote: > > > > Weird, I used Jack's files and it worked on Sier

Re: [Fink-users] openssl failed on a Mac with Sierra and case-sensitive filesystem

I did pretty the modification as seen in the patch, but manually and it worked. Many thanks, Alan On 3 October 2016 at 18:17, Derek Homeier < de...@astro.physik.uni-goettingen.de> wrote: > On 3 Oct 2016, at 12:14 pm, Alan <alanwil...@gmail.com> wrote: > > > > Howeve

Re: [Fink-users] Error in installing guile20

Weird, I used Jack's files and it worked on Sierra. Fighting now to get openssl (another email submitted). Many thanks, Alan On 1 October 2016 at 02:41, Derek Homeier < de...@astro.physik.uni-goettingen.de> wrote: > Jack, > > > On 30 Sep 2016, at 8:23 pm, Jack How

Re: [Fink-users] openssl failed on a Mac with Sierra and case-sensitive filesystem

to install? Many thanks in advance, Alan On 3 October 2016 at 10:03, Schindler Karl-Michael < karl-michael.schind...@web.de> wrote: > > > Am 02.10.2016 um 21:03 schrieb fink-users-requ...@lists.sourceforge.net: > > > > Date: Sun, 2 Oct 2016 00:07:27 +0100 > > Fr

[Fink-users] openssl failed on a Mac with Sierra and case-sensitive filesystem

ed.) Removing fink-buildlock-openssl110-dev-1.1.0a-1 ... Failed: phase installing: openssl110-dev-1.1.0a-1 failed Package manager version: 0.41.0 Distribution version: selfupdate-rsync Sat Oct 1 17:25:26 2016, 10.12, x86_64 Trees: local/main stable/main Xcode.app: 8.0 Xcode command-lin

[Fink-users] Problem compiling xfree86 on 10.2.1 6D42

back and kick (clean everything out and go from the ground up..) Alan --- This sf.net email is sponsored by: OSDN - Tired of that same old cell phone? Get a new here for FREE! https://www.inphonic.com/r.asp?r=sourceforge1refcode1=vs3390

[Fink-users] Re: KDE - unreadable text in all gui components

alphabetic sign to be seen, though KDE had been working ... Looking at the startkde script, this locates quite well where this msg came from _ but my permissions seem all OK, and unchanged from before ; _ and I don't have --- Alan Grover [EMAIL PROTECTED

[Fink-users] source /sw/bin/init.csh (was KDE - unreadable text in all gui components)

been unaware of this. So, don't forget to source the fink init in your shell init (or the system shell init). I suggest that the Fink man-page should mention this. On Saturday, Jul 5, 2003, at 17:48 America/Detroit, Alan Grover wrote: I had the same problem, just apt-get'd KDE. I found

[Fink-users] X11 help - off topic!! :(

not found. Anyone of you guru's know how to let the box get into my X session?? Thanks! Alan --- This SF.Net email is sponsored by: IBM Linux Tutorials Free Linux tutorial presented by Daniel Robbins, President and CEO of GenToo technologies. Learn

Re: [Fink-users] screenshot of root window

Yes, and I think there is an app called GRAB ( Apple native in utilities that does this easily )... On May 11, 2004, at 4:52 PM, Jeff Speir wrote: Maybe I'm not following the train of thought, but OS X has built in screen shot capability. Go to Finder, Help menu, Mac Help - search for 'screen

Re: [Fink-users] Using X11 fullscreen on one of two displays only ?

Marc Baaden [EMAIL PROTECTED] wrote: I wonder whether I could launch X11 in a way that it only uses the 1024x768 laptop screen in a fullscreen fashion ? This way I could keep controling things from OSX while watching the results on the X11 screen ... I do not know the answer to your question,

[Fink-users] Install 10.2 package on 10.3

I have Mac OS X 10.3 installed, and would like to install the ncbitools package, which is only available under 10.2 unstable. Is it possible to do this? --- This SF.net email is sponsored by: Splunk Inc. Do you grep through log files for

[Fink-users] TIP: fixing problems with installing apache2 on 10.4

the built-in one, the orphaned (/sw/sbin/apache2), and reconfigured the apache2.conf so that it could come up, I was able to complete the install. Just wanted to post this since I wasted about 8 hours today figuring this out. Good luck, Alan

[Fink-users] Manually downloading Fink packages

/direct_download/source/ Do the fink info files apply only to the binaries? And the deb files apply to the source? Thanks Alan J. Robinson - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version

[Fink-users] problem with plotting with python (matplotlib) on Desktop

Hi All, I have installed matplotlib-py25 on both my Desktop (intel mac) and Macbook pro (intel) both running Leopard. During testing I found that everything worked fine on my Macbook, that is I could do a simple plot, however following the same fink install process on my Desktop I was

[Fink-users] vncserver: couldn't find Xvnc on your PATH

Hi. Anyone know what happened to the tightvnc package ? It still installs, but Xvnc is no longer included, which makes it unsuitable for my purposes. Is there another way for me to easily get TightVNC's Xvnc installed? Can I revert to an older version of the Fink package that still has it?

Re: [Fink-users] vncserver: couldn't find Xvnc on your PATH

Alexander Hansen [EMAIL PROTECTED] wrote: On Monday 14 July 2008 13:54:18 Douglas Alan wrote: Hi. Anyone know what happened to the tightvnc package ? It still installs, but Xvnc is no longer included, which makes it unsuitable for my purposes. Is there another way for me to easily

[Fink-users] findutils and Time Machine, two great tastes that don't go great together

I'm not sure where the right place to report fink package bugs is, so I'll do so here: The findutils package adds an anacron job that runs a find over all your filesystems in the wee hours of the morning in order to build the database for locate. Unfortunately, if you happen to have a Time

Re: [Fink-users] findutils and Time Machine, two great tastes that don't go great together

On Sun, Oct 18, 2009 at 7:02 PM, monipol moni...@gmx.com wrote: Hello, Douglas. This looks like an upstream (GNU) bug. Would you please report it to them? Okay, I have reported the issue to them. |ouglas -- Come

[Fink-users] mftrace not working?

I've been having a rather strange problem using mftrace from Fink, I get the following error when I attempt to generate a Type1 font from my METAFONT source. I've also tested this on Linux with mftrace 1.1.9 and the exact same version of FontForge, but it works just fine. Does anyone have

Re: [Fink-users] mftrace not working?

Alexander K. Hansen wrote: I've been having a rather strange problem using mftrace from Fink, I get the following error when I attempt to generate a Type1 font from my METAFONT source.  I've also tested this on Linux with mftrace 1.1.9 and the exact same version of FontForge, but it

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