Hi Claudia
it really depends on the individual case and what's causing the
exclusion. Does the wm.mgz look accurate? If so, you may have a
topological defect that is being fixed incorrectly. Usually we focus on
fixing the white boundary and that will also correct the pial. You can
set the
Hi Bruce,
I think wm.mgz it's accurate enough, but what you mean?
I'm trying to upload data, but I've problems with your server.
Cheers,
Claudia
2013/4/29 Claudia Dacquino claudia.dacqu...@gmail.com
Hi Bruce,
I think wm.mgz it's accurate enough, but what you mean?
I'm trying to upload data,
is the intensity at those voxels 110 after you have processed with
autorecon2-cp?
On Mon, 29 Apr 2013, Claudia Dacquino wrote:
The problem is that after editng manually WM by adding control points, I
still have some WM and GM areas not included in either the pial or WM
boundaries, but I can
Hi Claudia,
Make sure you use the filedrop to upload your data
https://gate.nmr.mgh.harvard.edu/filedrop2/
Cheers, Shantanu
On Mon, April 29, 2013 9:53 am, Claudia Dacquino wrote:
Hi Bruce,
I think wm.mgz it's accurate enough, but what you mean?
I'm trying to upload data, but I've problems
Bruce,
no the intensity is lesser then 110 at those voxels, it's like 60-70.
Claudia
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
is the intensity at those voxels 110 after you have processed with
autorecon2-cp?
On Mon, 29 Apr 2013, Claudia Dacquino wrote:
The problem is that after
then it's not rerunning the -cp. And is it really wm if it's that dark?
On
Mon, 29 Apr 2013, Claudia Dacquino wrote:
Bruce,no the intensity is lesser then 110 at those voxels, it's like 60-70.
Claudia
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
is the intensity at those voxels
Yes it's my doubt too, but how can I check this?
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
then it's not rerunning the -cp. And is it really wm if it's that dark?
On Mon, 29 Apr 2013, Claudia Dacquino wrote:
Bruce,no the intensity is lesser then 110 at those voxels, it's like
visually is the only way. Do you think it is white matter?
On Mon, 29 Apr
2013, Claudia Dacquino wrote:
Yes it's my doubt too, but how can I check this?
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
then it's not rerunning the -cp. And is it really wm if it's
that dark?
Actually it could not be WM, but I'm quite sure that there is grey matter
excluded by pial bounaries as well, how can I add that?
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
visually is the only way. Do you think it is white matter?
On Mon, 29 Apr 2013, Claudia Dacquino wrote:
Yes
But in brainmask.mgz lh.white -aux T1.mgz -aux-surface rh.white
-segmentation aseg.mgz it's labeled as white matter, could it be possible?
2013/4/29 Claudia Dacquino claudia.dacqu...@gmail.com
Actually it could not be WM, but I'm quite sure that there is grey matter
excluded by pial bounaries
Hi Claudia
now I'm confused. Did you put control points in those voxels? You
definitely, definitely must avoid putting them in voxels that contain
anything other than WM. The pial surface will usually be incorrect if the
white surface is incorrect, so the first thing to do is make sure it is
I'm sorry Bruce I'm confusing you.
The fact is that those areas are labelled as WM, so I thought those were
white matter, but looking with more attention at wm.mgz I did realize that
they could me no WM, as you seggested me, because they are too dark.
I'm new and I'm learning by trial and error.
Hi Claudia
if you upload your whole subject and send us some example voxel coords of
where you are looking we will take a look
Bruce
On Mon, 29 Apr 2013, Claudia Dacquino wrote:
I'm sorry Bruce I'm confusing you.The fact is that those areas are labelled
as WM, so I thought those were white
I'm uploading my subjdir on FTP server.
Thanks a lot.
Claudia
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
Hi Claudia
if you upload your whole subject and send us some example voxel coords of
where you are looking we will take a look
Bruce
On Mon, 29 Apr 2013, Claudia Dacquino
my subjdir is on FTP server.
thanks
claudia
2013/4/29 Claudia Dacquino claudia.dacqu...@gmail.com
I'm uploading my subjdir on FTP server.
Thanks a lot.
Claudia
2013/4/29 Bruce Fischl fis...@nmr.mgh.harvard.edu
Hi Claudia
if you upload your whole subject and send us some example voxel
15 matches
Mail list logo
