Hi Nate,
without a trailing slash it works. I created PR #339, that removes
trailing slashes from tool IDs.
Thanks!
Bjoern
Hi Björn,
Please try it without the trailing slash on the tool ID.
--nate
On Wed, Feb 26, 2014 at 11:28 AM, Björn Grüning
bjoern.gruen...@gmail.comwrote:
Hi
Hi Nate,
sorry to bother you again, but that issue is still not fixed for me.
The following is supposed to work, or?
tool
id=toolshed.g2.bx.psu.edu/repos/devteam/ncbi_blast_plus/ncbi_blastn_wrapper/
destination=24_cores_24G /
tool
Hi Björn,
Please try it without the trailing slash on the tool ID.
--nate
On Wed, Feb 26, 2014 at 11:28 AM, Björn Grüning
bjoern.gruen...@gmail.comwrote:
Hi Nate,
sorry to bother you again, but that issue is still not fixed for me.
The following is supposed to work, or?
tool
, 15 February 2014 4:37 a.m.
To: Björn Grüning
Cc: Guest, Simon; galaxy-dev@lists.bx.psu.edu
Subject: Re: [galaxy-dev] Difficulty dispatching toolshed tool jobs via
job_conf.xml
Hi Björn,
It should be fixed, the problem was with tools with uppercase characters
in the guid:
https
Hi Björn,
It should be fixed, the problem was with tools with uppercase characters in
the guid:
https://bitbucket.org/galaxy/galaxy-central/commits/0b955e54451c/
--nate
On Thu, Feb 13, 2014 at 2:38 AM, Björn Grüning bjoern.gruen...@gmail.comwrote:
Hi Nate Simon,
was that solved? I
Hi Nate Simon,
was that solved? I think it's still not working? Or is that a
regression. In particular shed_host/repos/owner/repo/tool_id is not
working, and that is what is 90% needed, or?
Thanks,
Bjoern
From: Nate Coraor [mailto:n...@bx.psu.edu]
This should work, it looks like there
Hi Simon,
This should work, it looks like there may be a bug with handling tool shed IDs
when determining job destinations. You are actually supposed to be able to use
any of:
shed_host/repos/owner/repo/tool_id/version
shed_host/repos/owner/repo/tool_id
tool_id
I'll take a look at this
From: Nate Coraor [mailto:n...@bx.psu.edu]
This should work, it looks like there may be a bug with handling tool shed
IDs when determining job destinations. You are actually supposed to be
able to use any of:
shed_host/repos/owner/repo/tool_id/version
I am having trouble getting a toolshed tool to be dispatched to the destination
I list in the job_conf.xml file.
My job_conf.xml file looks like this:
?xml version=1.0?
job_conf
plugins
plugin id=local type=runner
load=galaxy.jobs.runners.local:LocalJobRunner workers=20/
