We are using PBS locally and had our cluster admin set this up, but I think the
same principle applies across most job runners/mgrs. As Peter mentioned, there
should be a way for cluster admin to add your server as an allowed submitting
host, the PBS variant is here:
Hi,
Just to keep you updated of my progress. I've just been talking with our
cluster administrator, and they are going to install LSF client on the machine
which currently host our Galaxy server making it a submitting node to the
cluster. I am now waiting to test how it is going to work when
Hi,
I am struggling at integrating galaxy with our cluster. I am currently running
galaxy on a separate server machine from our LSF cluster. The DRMAA library has
been installed on the cluster and I've re-installed galaxy into a shared file
system visible and accessible from both the server
On Wed, May 2, 2012 at 7:18 PM, Anne Pajon anne.pa...@cancer.org.uk wrote:
Hi,
I am struggling at integrating galaxy with our cluster. I am currently
running galaxy on a separate server machine from our LSF cluster.
The DRMAA library has been installed on the cluster and I've
re-installed
Hi Peter,
Thanks for the clarification, it is really helpful.
Would you mind sharing what needs to be done in term of configuration and
instalation to transform the galaxy server into a submitting job to the
cluster? Thanks.
Anne.
On 2 May 2012, at 21:51, Peter Cock wrote:
On Wed, May 2,
On Wed, May 2, 2012 at 9:58 PM, Anne Pajon anne.pa...@cancer.org.uk wrote:
Hi Peter,
Thanks for the clarification, it is really helpful.
Would you mind sharing what needs to be done in
term of configuration and instalation to transform
the galaxy server into a submitting job to the cluster?
Yes we do have an LSF cluster. Thanks indeed for all the information, Peter.
I'll contact our cluster administrator tomorrow and keep you posted on my
progress.
Kind regards,
Anne.
On 2 May 2012, at 22:07, Peter Cock wrote:
On Wed, May 2, 2012 at 9:58 PM, Anne Pajon anne.pa...@cancer.org.uk
