Hi,
also fixed, yes!
Good start in a day, to write positive mails :)
Bjoern
Hello Bjoern,
I believe this issue was corrected in changeset 10412:29ab5a6d75a7, which was
committed to the stable branch and is running on both tool sheds. At least I
am unable to reproduce the behavior you
Hello Bjoern,
I believe this issue was corrected in changeset 10412:29ab5a6d75a7, which was
committed to the stable branch and is running on both tool sheds. At least I
am unable to reproduce the behavior you describe using 3 similar repositories
in my local tool shed. Please let me know if
Hi Peter,
I believe this behavior is resolved with change set 10412:29ab5a6d75a7, which
was committed to the stable branch and is running on both tool sheds. You'll
need to update your Galaxy instance to get the fix. Pleaser let me know if I
have misunderstood the steps necessary to
Peter, Björn,
The August Galaxy release is out, and the template_command is now in the
stable repository and branch. Regarding matplotlib and numpy, I
currently only see matplotlib depending on the 74c21f9bdc39 revision of
numpy. Is this still an issue, or has it been resolved?
--Dave B.
On Tue, Aug 13, 2013 at 2:01 PM, Dave Bouvier d...@bx.psu.edu wrote:
Peter, Björn,
The August Galaxy release is out, and the template_command is now in the
stable repository and branch. Regarding matplotlib and numpy, I currently
only see matplotlib depending on the 74c21f9bdc39 revision of
Hi Dave,
for us I think everything is fixed. But we had a bad bug in the 'single
revision' implementation of the new 'Tool dependency definition' type.
We had something like that:
A (tool dependency definition) - B (tool) - C (workflow)
We changed A (that was numpy) and thought it would be ok
On Mon, 2013-08-12 at 12:50 +0100, Peter Cock wrote:
Hi all,
I'm currently trying out installation of tools from the Tool Shed
on a secondary Galaxy server (not our production server nor
my development setup). This is running galaxy-dist, current
latest stable I believe:
$ sudo -u galaxy
On Mon, Aug 12, 2013 at 12:54 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 12:50 +0100, Peter Cock wrote:
Hi all,
I'm currently trying out installation of tools from the Tool Shed
on a secondary Galaxy server (not our production server nor
my development setup).
On Mon, 2013-08-12 at 13:59 +0100, Peter Cock wrote:
On Mon, Aug 12, 2013 at 12:54 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 12:50 +0100, Peter Cock wrote:
Hi all,
I'm currently trying out installation of tools from the Tool Shed
on a secondary Galaxy
On Mon, Aug 12, 2013 at 2:04 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 13:59 +0100, Peter Cock wrote:
On Mon, Aug 12, 2013 at 12:54 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 12:50 +0100, Peter Cock wrote:
Hi all,
I'm
On Mon, 2013-08-12 at 14:13 +0100, Peter Cock wrote:
On Mon, Aug 12, 2013 at 2:04 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 13:59 +0100, Peter Cock wrote:
On Mon, Aug 12, 2013 at 12:54 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon,
On Mon, Aug 12, 2013 at 2:18 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 14:13 +0100, Peter Cock wrote:
I expect that in the meantime this bug will hit other people
as well (and until the Tool Shed testing is improved I'm a
little worried there could be other
On Mon, 2013-08-12 at 14:30 +0100, Peter Cock wrote:
On Mon, Aug 12, 2013 at 2:18 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 14:13 +0100, Peter Cock wrote:
I expect that in the meantime this bug will hit other people
as well (and until the Tool Shed
On Mon, Aug 12, 2013 at 2:49 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
Ahhh, right the revisions are gone. So the latest is always the one that
are used. Oh oh ... I will screen through my github history and try to
revert the numpy package until next stable is out.
My guess is that
Ok reverted it!
Its now to a normal bash definition and I removed the atlas and lapack
definitions. So it should build but it has performance regressions.
If the new galaxy stable is out, I will upload the new version.
Hope it builds now for you.
Bjoern
bjoern.gruen...@gmail.com wrote:
On Mon, Aug 12, 2013 at 3:10 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
Ok reverted it!
Its now to a normal bash definition and I removed the atlas and lapack
definitions. So it should build but it has performance regressions.
If the new galaxy stable is out, I will upload the new
On Mon, 2013-08-12 at 15:55 +0100, Peter Cock wrote:
Maybe I should retitle this thread...
On Mon, Aug 12, 2013 at 3:43 PM, Peter Cock p.j.a.c...@googlemail.com wrote:
On Mon, Aug 12, 2013 at 3:10 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
Ok reverted it!
Its now to a normal
On Mon, Aug 12, 2013 at 4:25 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 15:55 +0100, Peter Cock wrote:
Maybe I should retitle this thread...
On Mon, Aug 12, 2013 at 3:43 PM, Peter Cock p.j.a.c...@googlemail.com
wrote:
Thank you - installing the NumPy
On Mon, 2013-08-12 at 16:32 +0100, Peter Cock wrote:
On Mon, Aug 12, 2013 at 4:25 PM, Bjoern Gruening
bjoern.gruen...@gmail.com wrote:
On Mon, 2013-08-12 at 15:55 +0100, Peter Cock wrote:
Maybe I should retitle this thread...
On Mon, Aug 12, 2013 at 3:43 PM, Peter Cock
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