Hi guys,
I just configured our galaxy to utilize multiple instance and having exact
issue. Couldn't see any error from the log thought.
Regards,
Derrick
On Fri, May 25, 2012 at 12:14 AM, Sarah Diehl di...@immunbio.mpg.de wrote:
**
Hi all,
I have a similar, maybe related problem. I'm
Dear all,
Does Galaxy have any mechanisms to set the priority of jobs
submitted to the cluster? Specifically I am interested in SGE
via DRMAA, but this is a general issue. If there is some existing
code, I might be able to use it for the following situation:
The specific motivation is for
-- Forwarded message --
From: CHEBBI Mohamed Amine chebbimam...@gmail.com
Date: 2012/5/25
Subject: Proftpd Problem
To: galaxy-dev@lists.bx.psu.edu
Hi,
I'am trying to set up ProFTP on Debain to enable FTP upload on Galaxy
installed locally? I followed the instructions on this
Hi Roger
Have a look at the Reserved Variables on this wiki page:
http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax?#A.3Ccommand.3E_tag_set
I guess, his is what you are after?
Also, please use the 'galaxy-dev' mailing list (cc'ed) for questions
regarding local installation,
Dear Galaxy,
I'm working with a data set with 8 samples and have run them through bow tie
(previously) and am trying to run them in cufflinks now. The odd numbered
samples I have run fine and produce data but the even numbered samples I have
all produce no data in terms of an FPKM or any other
Dear Greg,
thanks a lot for your detailed answer. You've done some amazing work for the
tool shed!
I really like the requirements tags, they make a lot of sense for many of our
tools.
I still have some questions about the way our tools could benefit from this new
method. Some of our tools
Hi,
I have installed the local galaxy. I deleted a few histories in order to get
some disk space. However, the disk space did not change after the deletion of
the histories.
Do you why ? How can I get some disk space by deleting histories ?
Thanks,
This
I am getting following errors in the galaxy log:
{{{
Error reading tool from path: human_genome_variation/sift.xml
Traceback (most recent call last):
File /home/shantanu/galaxy/galaxy-uab/lib/galaxy/tools/__init__.py, line
315, in load_tool_tag_set
tool = self.load_tool( os.path.join(
Hello all,
Just a reminder that early registration for the 2012 Galaxy Community
Conference (GCC2012) http://galaxyproject.org/wiki/Events/GCC2012, being
held in Chicago, Illinois, July 25-27, *closes on June 11, one week from
today*. Registering early saves 36 to 42% on registration costs, and
Hello,
Is there any plan of installing TopHat fusion in Galaxy in near future.
Thanks
Katie
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists,
Just want to update on the list about this error. I had followed up with Greg
on this issue off-list as I didn't want to share all the hg output here on the
list.
The galaxy had downloaded Mercurial egg however it's directory wasn't defined
in the PYTHONPATH environment variable. However, it
Greetings Galaxy Devs!
I've been doing a fair amount of poking around in the forums and on the wiki
but haven't found a satisfying answer to my query...
Has anyone come up with a workable solution to run jobs from a local
installation of galaxy on a campus cluster or on XSEDE/TeraGrid? While
Hi,
When I try to use pbs job runners on my local galaxy installation I get an
error message such as:
galaxy.jobs.runners.pbs DEBUG 2012-06-04 12:57:02,827 (22) pbs_submit failed,
PBS error 15035: Unknown resource
I'm hoping someone can give me pointers about how to debug this or where to
Hello Shantanu,
Sorry for the delay on this - I've been backed up since the weekend when we
were trading emails. The way Galaxy works with eggs is fairly complex with
regard to handling conflicts, which is undoubtedly what is happening in your
environment since you have the mercurial package
On Jun 4, 2012, at 3:45 PM, Greg Von Kuster wrote:
Hello Shantanu,
Sorry for the delay on this - I've been backed up since the weekend when we
were trading emails. The way Galaxy works with eggs is fairly complex with
regard to handling conflicts, which is undoubtedly what is happening in
My apologies for cluttering the list. I should have experimented with the pbs
url more before posting the question. Apparently I got the pbs_server part
wrong; if I omit it, everything is fine.
Terri
From: galaxy-dev-boun...@lists.bx.psu.edu
Hi Nate,
I am using local instance galaxy in my system . I want add one new mako
page in galaxy .how can i add in galaxy ?
Regards
shashi
---
This e-mail is for the
17 matches
Mail list logo
