Hello,
I try to connect my local instance of Galaxy to IGV but I receive this
error message : *server redirected too many times (20)*
I can see the IGV link in my dataset and I can open IGV thought my local
instance but my dataset is not found.
Here is modifiactions of my local instance:
*
Hello,
I upgraded to the latest version running: hg pull and then hg update.
When trying to stop and start galaxy I got the following message:
$ galaxy stop
Stopping galaxy... No PID file exists in paster.pid
done.
$ galaxy start
Starting galaxy...
Entering daemon mode
...done.
Hi Karen,
Can you first switch to the user under which Galaxy runs, and go to the
home directory of Galaxy: over there, run ./run.sh and watch which error
messages appear. This should give you more information. It is
recommended after a update to run Galaxy first like this.
Kind regards,
Hi,
I have a question about the tool Profile Annotations in the Operate on
Genomic Intervals.
I am trying to install this tool on the galaxy, but when I run the program, it
shows this error message:
AssertionError: Configuration error: Table directory is missing
Hi Shaun,
You should be able to find more details in your Galaxy server's log(s). If you
have job separate job handler processes, those logs would be the place to look.
--nate
On Jun 7, 2013, at 5:31 AM, Shaun Webb wrote:
Hi, I have created a tool and added it to a local tool shed. It
Hello all,
I have a question: does anyone know if it is possible to install Galaxy on an
EC2 instance as you would on a local machine, not using CloudMan, and then view
it in the web browser by going to public_ip:8080? I have been trying and it has
not been working for me.
Thanks so much!
Hi Daniel,
This should work fine. You'll need to make sure that you have the host setting
in your universe_wsgi.ini like:
host = 0.0.0.0
and that the port 8080 is open/accessible in the security group settings for
the instance in AWS.
Thanks for using Galaxy,
Dan
On Jun 10, 2013, at 4:42
Hey all,
I've been trying to run a workflow on Galaxy, which basically attempts to
establish a correlation between the Chip-Chip, Polymerase binding and Dnase
Hypersensitivity data. The input would be these 3 files, I am initially
performing a liftover on the Chip-Chip data to convert from hg18
Hi all,
Looked for this in the list but couldn't find it. Admittedly I was using
gmail to search the list so I may have missed it - apologies if so.
I have put a very simple tool into a local toolshed (latest version of
toolshed) which just consists of an xml wrapper and a perl script in the
