. But when the user signs
into galaxy they cannot view their file in the get data - from files
on my computer.
Proftp config is listed below.
Cheers James Boocock
ServerName Public Galaxy FTP
ServerType standalone
DefaultServer on
Port
Hi,
I have setup a galaxy production server and created a admins.txt file
with comma separated account names. When running galaxy and logged into
one of the activated accounts I cannot view the interface.
Configs Listed Below
Cheers James.
#Config File
file:universe config
Hi When running the run_unit_tests.sh script on my server i get the
following Error. Wondering what It means and whether It is something I
have done or something within galaxy
#Start Error
Doctest: galaxy.web.form_builder.TextArea ... ok
TextField (galaxy.web.form_builder)
Doctest:
# @Date 9/01/2012
3 # @Author Ed Hills, James Boocock
4 #
5 # This file will take a white space separated list of file names,
6 # and run the vcf-merge tool and merge all files into a new file.
7 #
8 # INPUTS
9 # $1 = First input File
10 # $2 = Second input File
11 # $N = Extra input
# @Date 9/01/2012
3 # @Author Ed Hills, James Boocock
4 #
5 # This file will take a white space separated list of file names,
6 # and run the vcf-merge tool and merge all files into a new file.
7 #
8 # INPUTS
9 # $1 = First input File
10 # $2 = Second input File
11 # $N = Extra input
Hi All,
Just a quick question regarding galaxy tool creation.
In the command tags
Is it possible to get a datasets history number for the history
the user initiated the job from?
Seems unlikely, the reason I ask is
that I have a tool that creates and output file for every input file
and the
Hi Guys
Regarding my earlier question about history names.
I found my answer on the wiki. ${input1.name} was
what I was looking for.
Cheers
James.
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Hi All,
Just a quick question regarding file compression.
We have a galaxy instance with limited space and a few
people are trying to start working on our server.
They will mainly be working with vcfs is there a way to make
galaxy keep the vcfs in gz format until they are needed. I know this
Hi Galaxy Dev Team.
We are looking to put xgrid into the galaxy api as part of a summer
project. We are
hoping to add this functionality directly into galaxy so that all users
can benefit.
We are curious where to start investigating how galaxy interfaces with
grids.
We hope to integrate
Hi Tan,
If you go into your tool xml file I think you will find a tag error the
traceback. Something like type=select you may have put thype a simple
typo.
Happy Holidays
James Boocock
On Sat, 2012-12-29 at 16:36 +0800, Tan Jun wrote:
Hi, all
I'm new here.
These days I'm trying
Hi Tan,
If you go into your tool xml file I think you will find a tag error the
traceback. Something like type=select you may have put thype a simple
typo.
Happy Holidays
James Boocock
On Sat, 2012-12-29 at 16:36 +0800, Tan Jun wrote:
Hi, all
I'm new here.
These days I'm trying
ProgrammingError: (ProgrammingError) You must not use 8-bit
bytestrings unless you use a text_factory that can interpret 8-bit
bytestrings (like text_factory = str). It is highly recommended that
you instead just switch your application to Unicode strings. u'UPDATE
job SET update_time=?, state=?,
ProgrammingError: (ProgrammingError) You must not use 8-bit
bytestrings unless you use a text_factory that can interpret 8-bit
bytestrings (like text_factory = str). It is highly recommended that
you instead just switch your application to Unicode strings. u'UPDATE
job SET update_time=?, state=?,
Hi All,
I am currently working on a clustering interface for galaxy that will
hopefully enable users to pick the grid
in the tool form.
With tools that need access to files within the galaxy directory, I
have an idea to create a symlinked
fake galaxy root with all the files the tools needs for
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