Re: [galaxy-dev] Retain the dbkey specified for an input dataset through a Galaxy workflow?

2016-01-27 Thread Greg Von Kuster
I’ve submitted an issue about this here: https://github.com/galaxyproject/galaxy/issues/1598 > On Jan 26, 2016, at 8:15 AM, Greg Von Kuster <g...@bx.psu.edu> wrote: > > I’ve tracked down how the dbkey is getting lost on tool output datasets that > are part of a colle

Re: [galaxy-dev] Retain the dbkey specified for an input dataset through a Galaxy workflow?

2016-01-26 Thread Greg Von Kuster
this approach to a fix, but if the fix is as simple as adding some kind of dbkey designation to the tag set, an example of what that should look like would be much appreciated. Thanks very much! Greg Von Kuster > On Jan 25, 2016, at 10:11 AM, Greg Von Kuster <g...@bx.psu.edu> wrote:

Re: [galaxy-dev] Retain the dbkey specified for an input dataset through a Galaxy workflow?

2016-01-25 Thread Greg Von Kuster
6, at 2:34 PM, Greg Von Kuster <g...@bx.psu.edu> wrote: > > Hello Galaxians, > > I’m running Galaxy 15.10 and running workflows that include tools that > require reference genomes (e.g. Extract Genomic DNA). I set the dbkey for > the input dataset and it is retained for

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
process for doing this? How does a Galaxy admin find out that this particular visualization exists and where to get it? Thanks! Greg Von Kuster > On Nov 30, 2015, at 11:06 AM, Björn Grüning <bjoern.gruen...@gmail.com> wrote: > > Hi Greg, > > please have a look at: &g

[galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
at the code base, it seems that 3rd party Javascript libraries are kept in ~/static/scripts. Should all of the 3rd party libraries that are used by my plugin be added here as part of the PR? Thanks very much, Greg Von Kuster ___ Please

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
oviding > visualisations. For the time being the best thing we can do is to join > github repositories to have as less as possible. So the few repos out > there get more attraction. > > Cheers, > Bjoern > >> Thanks! >> >> Greg Von Kuster >> >>

Re: [galaxy-dev] Question about contributing a Visualization plugin to Galaxy

2015-11-30 Thread Greg Von Kuster
ia a PR, and I’m hoping someone can privide the details for how >>> to prepare the Javascript files that will be included in the PR. >>> >>> 1) What is the process for compressing the Javascript files? >>> >>> 2) Looking at the code base, it seems tha

Re: [galaxy-dev] Hey, I got some problem using galaxy, If you have a time, I hope your help..!!

2015-10-28 Thread Greg Von Kuster
questions to the mailing list. Regards, Greg Von Kuster > On Oct 28, 2015, at 12:56 AM, 홍윤지 <yoong0...@gmail.com> wrote: > > hey, my name is yoong in korean student . > i'd like to run the program name Mapsplice2, so i made a xml file, and submit > that >

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-30 Thread Greg Von Kuster
The answer for this is available here: http://dev.list.galaxyproject.org/Question-about-using-dynamic-options-and-refresh-on-change-for-rendering-2-associated-select-lists-td4667950.html#none > On Sep 20, 2015, at 9:56 PM, Greg Von Kuster <g...@bx.psu.edu> wrote: > > Thanks

[galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-20 Thread Greg Von Kuster
’]]] Can someone let me know if this is currently possible, and if so, an example tool that does it? If it’s not possible, does the above approach seem reasonable, or is there a better way? Thanks very much, Greg Von Kuster ___ Please keep

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-20 Thread Greg Von Kuster
Thanks Sam, I’ll repost my original question to see if someone can provide an answer. Greg Von Kuster > On Sep 18, 2015, at 4:20 PM, Aysam Guerler <aysam.guer...@gmail.com > <mailto:aysam.guer...@gmail.com>> wrote: > > Hi Greg, > > I am not sure which data sou

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-20 Thread Greg Von Kuster
Thanks Sam, I’ll repost my original question to see if someone can provide an answer. Greg Von Kuster > On Sep 18, 2015, at 4:20 PM, Aysam Guerler <aysam.guer...@gmail.com > <mailto:aysam.guer...@gmail.com>> wrote: > > Hi Greg, > > I am not sure which data sou

[galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-18 Thread Greg Von Kuster
Hello all, I’m working on adding support to the Galaxy framework for datatypes in the constructive solid geometry (CSG) space and I have several working Galaxy tools and a visualization plugin that deal with 3d shapes in this environment. All of this work will soon be contributed to open

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-18 Thread Greg Von Kuster
jJxCi/428-305-potential-bug-in-dynamic-options-filters > > <https://trello.com/c/NOmjJxCi/428-305-potential-bug-in-dynamic-options-filters>. > > Hope this helps, > Sam > > On Fri, Sep 18, 2015 at 8:30 AM, Greg Von Kuster <g...@bx.psu.edu > <mailto:g...@bx.p

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

2015-09-18 Thread Greg Von Kuster
:41 AM, Greg Von Kuster <g...@bx.psu.edu> wrote: > > Hi Sam, > > Thanks for the pointer to the Trello card. I noticed the card is kind of old > (I think it predates data tables), so I just wanted to confirm the approach. > For my tool, should I use the existing f