Hi Ravi
To start, have a look at those wiki pages:
https://wiki.galaxyproject.org/Admin/Config/ToolDependencies
https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies
Regards, Hans-Rudolf
On 05/14/2014 06:43 PM, Ravi Alla wrote:
Hi All,
Due to the nature of our cluster we are not allo
Hi Neil
I am not aware of any (hidden) download options.
I usually go with 'copy-paste' and process in R or manually. Also, if I
need specific information which is often not displayed on the reports
page I get it directly out of the MySQL/PostgreSQL database. For such
cases it is handy to hav
Hello all,
I ran into a problem with a conditional select parameter not working when
shown as a radio box - despite the HTML having refresh_on_change set:
Molecule type of FASTA inputs:
protein
nucleotide
The simple workaround of using a drop-box select box instead
Trello card created - https://trello.com/c/aRbdQB3y. Thanks for the
re-bug report guys, sorry if something got lost at some point.
-John
On Thu, May 15, 2014 at 9:48 AM, Hans-Rudolf Hotz wrote:
> Hi Peter
>
> yes, we have been running into the same problem and it is an old problem
> which has be
Hi Peter
yes, we have been running into the same problem and it is an old problem
which has been reported long time ago by other people as well, eg:
Pieter Neerincx' email from May 2010 (Conditional params don't update
properly when using radio buttons instead of popup menus.):
I found the e
On Thu, May 15, 2014 at 3:48 PM, Hans-Rudolf Hotz wrote:
> Hi Peter
>
> yes, we have been running into the same problem and it is an old problem
> which has been reported long time ago by other people as well,
Thanks - that's good news (reproducible problem) and bad news then
(long standing open
Hi Robert,
I'm not sure that is a good idea - the existing upload tool gets
special treatment in many places in Galaxy (e.g. turning a history
into a workflow), and is itself being partly replaced with the newer
Galaxy work (there's a little icon above the tool panel to import
data).
Peter
P.S.
I believe Peter is correct - I think this is not documented because in
part this is not encouraged. The core team tries very hard to maintain
backward compatibility for tool wrappers - I don't think tools that do
uploads like this however will receive the same consideration (though
that is just my
Hi Neil,
The address fields can be populated from User -> Preferences -> Manage your
information -> User Addresses. You can also create custom forms - see the
"Manage form definitions" link in the admin section.
I believe it used to be possible to make custom "User Information" forms
required at
Hi,
I've noticed that $GALAXY_SLOTS that was always set to 1 when using LSF.
It turns out that LSF specifies the number of parallel slots using
$LSB_DJOB_NUMPROC env variable which isn't checked in
lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh. A
diff that describes the fix i
Awesome! Thanks for the patch - it has been committed as the following
changeset.
https://bitbucket.org/galaxy/galaxy-central/commits/fcd83883072c64b96ea0f12582fde3d05060b0f4
If anyone else is using something other then LSF, Torque, SLURM,
Condor, or SGE - please be aware of this potential proble
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