Hi, Galaxy, Developers,
My name is Dan Sullivan and I work at the University of Chicago in the
newly-formed Center for Research Informatics. This is my first post
to this list, and I am a very new Galaxy user, so please be patient
with me :-) I have a question regarding an error I am reciecveing
Hi, Galaxy Developers,
I have a hopefully quick question regarding configuring Galaxy cluster
integration; I've configured our universe_wsgi.ini to include the
options specified in this document:
http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Cluster#Submitting_Jobs_as_the_Real_User
set_met
Hi, Galaxy Developers,
I sent an email to this list earlier this week regarding an issue I
was having with the 'schedule jobs as user' functionality of Galaxy.
I am taking a closer look at the documentation on this configuration
option, and based on my reading, this feature is only supported with
Hi, Galaxy Community,
Greetings from The University of Chicago; I hope all who attended the
Galaxy conference enjoyed it as much as I did. I have searched the
mailing list archives as well as Google to a resolve problem I am
seeing, however I am somewhat at a loss as to the next course of
action
Hi, Galaxy Developers,
I have what I hops is somewhat of a basic question regarding Galaxy's
interaction with a pbs job cluster and information reported via the webUI.
Basically, in certain situations, the walltime of a specific job is
exceeded. This is of course to be expected and all fine and
u
issues.
Respectfully yours,
Dan Sullivan
On Tue, Nov 5, 2013 at 8:52 PM, John Chilton wrote:
> On Tue, Nov 5, 2013 at 11:53 AM, Daniel Patrick Sullivan
> wrote:
> > Hi, John,
> >
> > Thank you for taking the time to help me look into this issue. I have
> > appl
you so much for your
> help with this. I will let you know if I experience any additional issues.
>
> Respectfully yours,
>
> Dan Sullivan
>
>
> On Tue, Nov 5, 2013 at 8:52 PM, John Chilton wrote:
>
>> On Tue, Nov 5, 2013 at 11:53 AM, Daniel Patrick Sullivan
&g
Hi, Galaxy-Developers,
I apologize if this question has been answered before; I'm trying to
override a couple of environment variables on a per-tool level, for a tool
that is not installed in the toolshed. I've read a post on the mailing
list that suggests this is possible for tools installed fro
Hi, Galaxy Developers,
I have searched the wiki and the mailing list and I can't seem to find an
answer to this question (if there is a wiki page or a post that I missed, I
apologize). Presumably there is a preferred way to do what I'm trying to
do.
I basically want to make some small cosmetic c
again if
I need further assistance. Thank you so much for taking the time to read
my post.
Dan Sullivan
On Thu, Jan 2, 2014 at 3:09 PM, Daniel Patrick Sullivan <
dansulli...@gmail.com> wrote:
> Hi, Galaxy Developers,
>
> I have searched the wiki and the mailing list and I can
Hi, Greg,
Thank-you so much for taking the time to answer my question. You
appear to be correct; I removed the virtual hosting configuration from
apache (I had some redirection configured to automatically forward
from port 80 to port 443), and this problem went away. I think I
should be able to
Hi, Galaxy Developers,
I have a couple of hopefully quick questions regarding PBS integration with
Galaxy;
I noticed (based on taking a look at the PBS log data) that Galaxy
authenticates rather frequently to the pbs_mom server (please see the log
data at the end of this email).
Is the frequency
Hi, Ross,
I appreciate you taking the time to answer my inquiry. I did know about
the options that technically should not be set on a production server (i.e.
debug), although I have to admit I did not fully understand the
implications of this (i.e. "your Galaxy process may run out of memory if
it
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