Hi,
There was a change made recently. I ran into it as well. Look at this section
of the nginx conf:
location /_upload_done {
set $dst /galaxy/tool_runner/index;
if ($args ~ nginx_redir=([^&]+)) {
set $dst $1;
}
Change the set $dst line
Hi,
I'm seeing the following error when trying to use upload file with a local file
that is larger than 8Kb:
galaxy.web.framework.decorators ERROR 2015-02-19 16:51:48,280 Uncaught
exception in exposed API method:
Traceback (most recent call last):
File "/BigData/galaxy/galaxy-dist/lib/galaxy/
edir=([^&]+)) {
set $dst $1;
}
rewrite "" $dst;
}
-Sheldon
-Original Message-
From: John Chilton [mailto:jmchil...@gmail.com]
Sent: Friday, February 20, 2015 2:30 PM
To: Briand, Sheldon
Cc: galaxy-...@lists.bx.psu.edu De
Hi,
I've done the recently announced security update for my running release which
is 15.01. I figured I had better switch to git now while I was at it. However
I'm having trouble matching revisions in git.
I have looked at the instructions in the Develop/SourceCode page of the Wiki.
I've us
Hi,
I have galaxy 16.10. Whenever I try to download a file now nothing happens. I
have followed the configuration guide for nginx to allow it to handle file
downloads. However the nginx logs show that the file path has
/etc/nginx/htmlTrue in front of the correct path. Obviously I have a
mi
,
-Sheldon
From: Briand, Sheldon (NRC/CNRC)
Sent: Wednesday, February 15, 2017 2:01 PM
To: 'galaxy-dev@lists.galaxyproject.org'
Subject: nginx x-accel
Hi,
I have galaxy 16.10. Whenever I try to download a file now nothing happens. I
have followed the configuration guide for nginx to a
Hi,
I've updated to Galaxy 17.01 from Galaxy 16.07. Today I am having trouble
installing or updating tools. Whenever I pick the option to install a tool
from the main toolshed I get a page that says:
"NOT FOUND
The requested url /admin_toolshed/prepare_to_install was not found on this
server
nt which
didn't help.
I was able to install tools in the past.
Has anyone run into this recently?
Thanks,
-Sheldon
From: Briand, Sheldon (NRC/CNRC)
Sent: Tuesday, May 02, 2017 5:30 PM
To: 'galaxy-dev@lists.galaxyproject.org'
Subject: unable to install tools
Hi,
I've updated
.
Thanks,
-Sheldon
From: Martin Čech [mailto:mar...@bx.psu.edu]
Sent: Wednesday, May 03, 2017 5:44 PM
To: Briand, Sheldon (NRC/CNRC) ;
galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] unable to install tools
Hi Sheldon,
I suspect this is a problem in your deployment - can you try testing
Hi,
I have upgraded to Galaxy 18.05 (from 17.05). I am running a torque job
scheduler (version 6.02).
When I submit a job through galaxy and I look in the admin/manage jobs section
I see that the job has been submitted successfully. It shows that the job is
queued and waiting to run. On the
...@gmail.com]
Sent: Wednesday, June 13, 2018 4:58 PM
To: Briand, Sheldon (NRC/CNRC)
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] pbs/torque jobs
Hi Sheldon,
is there anything particular about your job configuration, e.g.
are you you using the run as real user option or are you using
DEBUG 2018-06-14 11:12:23,214 [p:63562,w:2,m:0]
[PBSRunner.work_thread-1] (16117) Persisting job destination (destination id:
pbs_default)
From: Marius van den Beek [mailto:m.vandenb...@gmail.com]
Sent: Thursday, June 14, 2018 6:29 AM
To: Briand, Sheldon (NRC/CNRC)
Cc: galaxy-dev@lists
need to check the docs on venv
setup again.
Thanks,
-Sheldon
From: Marius van den Beek [mailto:m.vandenb...@gmail.com]
Sent: Thursday, June 14, 2018 12:27 PM
To: Briand, Sheldon (NRC/CNRC)
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] pbs/torque jobs
Could you try running a
[mailto:m.vandenb...@gmail.com]
Sent: Thursday, June 14, 2018 2:12 PM
To: Briand, Sheldon (NRC/CNRC)
Cc: galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] pbs/torque jobs
Hi Sheldon,
It is normal to have a pbs.py file in your virtualenv. This is a file provided
by pbs-python, which galaxy makes use
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